View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_low_17 (Length: 258)
Name: NF4070_low_17
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_low_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 34635841 - 34636080
Alignment:
| Q |
18 |
tcacagaggatactcaatttgtcccataatttgcatacacatttgaatggaaagactaatagtgtatgatgatcactctggtttcattcataggaggaaa |
117 |
Q |
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| T |
34635841 |
tcacagaggatactcaatttgtcccataatttgcatacacatttgaatggaaagattaatagtatatgatgatcattgtgctttcat---taggaggaaa |
34635937 |
T |
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| Q |
118 |
ataatcacatgttgtgtcactgtggtttagtggtagttttgagtttcga----cttttttaaaggcaaattggttgaaagtgttggcatttatatcttta |
213 |
Q |
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| T |
34635938 |
ataatcagatgttgtgtcactgtggtttagtggtagtttcgagtttcgacctccttttttaaaggcaaactggttgaaagtgttggcatttatatcctta |
34636037 |
T |
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| Q |
214 |
ataaggctttattacatcatctttgtataacttttaagtcatttt |
258 |
Q |
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| T |
34636038 |
ataaggcttcattacatcatctttgtataa--tttaagtcatttt |
34636080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 34643637 - 34643777
Alignment:
| Q |
99 |
tttcattcataggaggaaaataatcacatgttgtgtcactgtggtttagtggtagttttgagtttcgacttttttaaaggcaaattggttgaaagtgttg |
198 |
Q |
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| T |
34643637 |
tttcattcttaggaggaaaataatcagatattgtgtcattatggtttagtggtagtttctactt---actattttaaaggcacactggttgaaaatgtta |
34643733 |
T |
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| Q |
199 |
gcatt--tatatctttaataa-ggctttattacatcatctttgt |
239 |
Q |
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| T |
34643734 |
gcatttatatatccttagtaagggctttattatatcatctttgt |
34643777 |
T |
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