View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_low_19 (Length: 241)
Name: NF4070_low_19
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_low_19 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 34636339 - 34636114
Alignment:
| Q |
16 |
cagggatttcatcctctttctttaggcagtgaaaatagtcacaaaactctctatgttgtgtctgagaaacttcacattagattggaaatatgtaatgatg |
115 |
Q |
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| T |
34636339 |
cagggatttcatcttctttctttaggcagtgaaaatagtcacaaaactctctatgttgtgtctgagaaacttcacattacattggaaatatgtaatgatg |
34636240 |
T |
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| Q |
116 |
aaacttacccaaaaaataactattttaccttgttataatggaaaataagtgaataattcaaatatttttacaaaatattctaaaatgagtctcaatttcg |
215 |
Q |
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| T |
34636239 |
aaacttacccaaaaaataactattttaccttgttataatggaaaataagggaataattcaaatacttctacaaaatattctaaaatgagtttcaattatg |
34636140 |
T |
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| Q |
216 |
aaaaataccatctaatgtaaaataat |
241 |
Q |
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| T |
34636139 |
aaaaatagcatctaatgtaaaataat |
34636114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 34643976 - 34643815
Alignment:
| Q |
81 |
gaaacttcacattagattggaaatatgtaatgatgaaacttacccaaaaa---ataactattttaccttgttataatggaaaataagtgaataattcaaa |
177 |
Q |
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| T |
34643976 |
gaaacttcacattagattggaaatatgtaatgctga--ctttcccaacaataaaaaactattttaccttgatataatggaaaataagggaataattcaga |
34643879 |
T |
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| Q |
178 |
tatttttacaaaatattctaaaatgagtctcaatttcgaaaaataccatctaatgtaaaataat |
241 |
Q |
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| T |
34643878 |
tatttttataaaatattctaaaatgagtctcaattttgaaaaacaccctctaatgtaaaataat |
34643815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 34644335 - 34644292
Alignment:
| Q |
22 |
tttcatcctctttctttaggcagtgaaaatagtcacaaaactct |
65 |
Q |
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| T |
34644335 |
tttcatcctatttgtttaggcagtgaaaatagtcacagaactct |
34644292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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