View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_low_20 (Length: 239)
Name: NF4070_low_20
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 54794301 - 54794076
Alignment:
| Q |
1 |
tttcaatataaacctaaattagcatattatttaatgctgcccccgacaagagtctaaaagttgttacatgtgcctatgaatgcaactgggttaccatgtc |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54794301 |
tttcaatataaacctaaattagtatattatttaatgctgcccctgacaagagtctaaaagttgttacatgtgcctatgaatgcaactgggttaccatgtc |
54794202 |
T |
|
| Q |
101 |
attctttccaaattactattttagtctgtgaa---atcaatgaaaaatcaatgcaatgctgaacaagagctgagctgaaattctgaaaaataccttttgc |
197 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |
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| T |
54794201 |
attctttccaaattactattttagtatgtgaagctatcaatgaaaaatcaatgcaatgctgaacaagagctcagctgaaattctgaaacatacctttcgc |
54794102 |
T |
|
| Q |
198 |
ctatcctctcttgcgcttaagttgct |
223 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
54794101 |
ctatcctctcttgcgcttaagttgct |
54794076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 52286957 - 52286757
Alignment:
| Q |
26 |
attatttaatgctgcccccgacaagagtctaaaagttgttacatgtgcctatgaatgcaactgggttaccatgtcattctttccaaattactattttagt |
125 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52286957 |
attatttaatgctgcacccgacaagagtctaaaagttgttacatgtgcctatgattgcaactgggttaccatgtcattctttccaaattactattttagt |
52286858 |
T |
|
| Q |
126 |
ctgtgaa---atcaatgaaaaatcaatgcaatgctgaacaagagctgagctgaaattctgaaaaataccttttgcctatcctctcttgcgcttaagttgc |
222 |
Q |
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| T |
52286857 |
ccgtgaagctatcaatgaaaaatcaatgcaatgctgaaaaagtgctcagctgaaattctgaaacatacctttttcctatcctctcttgcgcttaagttgc |
52286758 |
T |
|
| Q |
223 |
t |
223 |
Q |
| |
|
| |
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| T |
52286757 |
t |
52286757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 802120 - 801920
Alignment:
| Q |
26 |
attatttaatgctgcccccgacaagagtctaaaagttgttacatgtgcctatgaatgcaactgggttaccatgtcattctttccaaattactattttagt |
125 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || || |||| ||||||||| |||||||| |
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| T |
802120 |
attatttaatactgcacccgacaagagtctaaaagttgttacatgtgcatatgaatgcaactgggttattatttc--tcttcccaaattaccattttagt |
802023 |
T |
|
| Q |
126 |
ctgtgaa---atcaatgaaaaatcaatgcaatgctgaacaagagctgagctgaaattctgaaaaataccttttgccta---tcctctcttgcgcttaagt |
219 |
Q |
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| T |
802022 |
cagtgaagctatcaatg-aatatccatgcaatgttgaacagaagctccactgaaagtctgaaacataccttttgcctatcctcctcttttgcgcttaagt |
801924 |
T |
|
| Q |
220 |
tgct |
223 |
Q |
| |
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|||| |
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|
| T |
801923 |
tgct |
801920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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