View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_low_3 (Length: 465)
Name: NF4070_low_3
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 25617031 - 25616596
Alignment:
| Q |
16 |
caaaatttagactcacctccaacatgggagctaaatagagtctactaagattagtgaatcatactctctaaaatcacattctcccatcccttaacaatag |
115 |
Q |
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| T |
25617031 |
caaaatttagactcacctccaacatgggagctaaatagagtctactaagattagtgaatcatactctcaaaaatcacattctcccatcccttaacaatag |
25616932 |
T |
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| Q |
116 |
ccatatgcagtccttctaatagtgaagtagcttcgccttcgaggattgataagttcgcttgtttccaacttgtttgtgacatcacaaattctccattgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
25616931 |
ccatatgcagtccttctaatagtgaagtagcttcgcattcgaggattgataagttcgcttgtttccaacttgtttgtaacatcacaaattcttcattgtt |
25616832 |
T |
|
| Q |
216 |
atttcgtacacagcactcaatggatgtaataccggctctttcgttaaatgccgcatccacattacatttgagcaagccataattaggcctctcccaatct |
315 |
Q |
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|||||||||||||||| ||||| |||||||||| |||||| ||||||||| |||||||| |||| |||||||||||||||||||||||||||| ||||| |
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| T |
25616831 |
atttcgtacacagcacccaatgaatgtaataccagctcttcggttaaatgctgcatccacgttacgtttgagcaagccataattaggcctctcctaatct |
25616732 |
T |
|
| Q |
316 |
gaactgctttgattccgaactgtaccagcccgcgtctgttgcaatctgttgacctcataccactgctgtcaagaatgcattgttttccttccaatactag |
415 |
Q |
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| T |
25616731 |
gaactgctttgattccgaactgtaccagcccgcgtctgttgcaatctgttgacctcataccactgctgccaagaattcattgttttcctttcaacactag |
25616632 |
T |
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| Q |
416 |
ctggtagagttactcttaaactcttccacaccagttcat |
454 |
Q |
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| T |
25616631 |
ctg---aagttactctcaaactcttccactccagttcat |
25616596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 345 - 451
Target Start/End: Original strand, 25612416 - 25612522
Alignment:
| Q |
345 |
ccgcgtctgttgcaatctgttgacctcataccactgctgtcaagaatgcattgttttccttccaatactagctggtagagttactcttaaactcttccac |
444 |
Q |
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||||||||||||||| |||||||| ||||| |||| ||| |||||| |||| ||||||||||||| |||||||| | || ||||||| |||||||||||| |
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| T |
25612416 |
ccgcgtctgttgcaacctgttgacttcatatcactactgccaagaacgcatagttttccttccaacactagctgatggaattactctcaaactcttccac |
25612515 |
T |
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| Q |
445 |
accagtt |
451 |
Q |
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||||||| |
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| T |
25612516 |
accagtt |
25612522 |
T |
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