View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_low_5 (Length: 383)
Name: NF4070_low_5
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 18092182 - 18091890
Alignment:
| Q |
7 |
gaattatgattgatctatatatgtagtctctacatctttttgttttctgcagaacttgatttgaagtgagcactcattggagaaagaataattgttcatt |
106 |
Q |
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| T |
18092182 |
gaattatgattgatctatatatgtagtctctacatctttttgttttctgcagaacttgatttgaagtgagcactcattggagaaagaataattgttcatt |
18092083 |
T |
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| Q |
107 |
caacgtgagcatacgctgaaagtactgcaaataaggtaaaaaacaatcatatagtttccnnnnnnnnnnnnnnnnnnnnnngcttatatatcaccttaga |
206 |
Q |
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| T |
18092082 |
caacgtgagcatacgctgaaagtactgcaaataaggtaaaaaacaatcatatagtttccttttattttatattttgtttttgcttatatatcaccttaga |
18091983 |
T |
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| Q |
207 |
aatgtatctttaattagtgcttgttttattatgtaatctatgcaataacaccacatatgtttatgaaagtaatacataggttcactggacgat |
299 |
Q |
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| T |
18091982 |
aatgtatctttaattagtgcttgttttattatgtaatctatgtaataacaccacataagtttatgaaagtaatacataggttcactggacgat |
18091890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 298 - 370
Target Start/End: Complemental strand, 18071902 - 18071830
Alignment:
| Q |
298 |
atttacaacggtaacaggaatgtgaggaccattctgaccgtattccagatttttgagtcttgtgtttcaagaa |
370 |
Q |
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| T |
18071902 |
atttacaacggtaacaggaatgtgaggaccattctgaccgtattccagatttttgagtcttgtgtttcaagaa |
18071830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 27422805 - 27422659
Alignment:
| Q |
22 |
tatatatgtagtctctacatctttttgttttctgcagaacttgatttgaagtgagcactcat--tggagaaagaataattgttcattcaacgtgagcata |
119 |
Q |
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| T |
27422805 |
tatatctgtagtctttacttctttttgtttcttgtagaatttgaattgaagtgggcactcatattggtgaaagaagaattgttcattcaacttgagctta |
27422706 |
T |
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| Q |
120 |
cgctgaaagtactgcaaataaggtaa-aaaacaatcatatagtttcc |
165 |
Q |
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| T |
27422705 |
cgctgaaagtgctgcaaataaggtaaaaaaacaatcatatagcttcc |
27422659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 27448577 - 27448424
Alignment:
| Q |
9 |
attatgattgatctatatatg---tagtc-tctacatctttttgttttctgcagaacttgatttgaagtgagcactcattggagaaagaataattgttca |
104 |
Q |
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| T |
27448577 |
attatgattaatctatatatgatgtagtcctctacttctatttctttgttgcagaacttgaattgaagttggtact-attggagaaagaagaattgttca |
27448479 |
T |
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| Q |
105 |
ttcaacgtgagcatacgctgaaagtactgcaaataaggtaaaaaacaatcatata |
159 |
Q |
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|||||| ||||| |||||||||||| || ||||||||||||||||||| ||||| |
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| T |
27448478 |
ttcaacttgagcttacgctgaaagtgcttgaaataaggtaaaaaacaataatata |
27448424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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