View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4070_low_8 (Length: 337)
Name: NF4070_low_8
Description: NF4070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4070_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 23481446 - 23481765
Alignment:
| Q |
18 |
acaaataccttgaaacatgaccctattataaaacccacaaaaaagtaaatcagtttagcaaacaaaatcgttcaacaaacccatataaaatcataggtgt |
117 |
Q |
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| T |
23481446 |
acaaataccctgaaacatgaccctattataaaacccacaaaaaagtaaatcagtttagcaaacaaaatctttcaacaaacccatttaaaatcataggtgt |
23481545 |
T |
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| Q |
118 |
tagtgcgcgatgtataagaaaatccattgtgggtgataggggtgtttgtggtgcggtttttagatagaacgtcgtctgatccaaaataaattttaca--- |
214 |
Q |
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| T |
23481546 |
cagtgcgtgatgtataagaaaatccattgtgggtgataggggtgtttgtggtgcgatttttagatagaatgtcatctgatccaaaataaattttacatgt |
23481645 |
T |
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| Q |
215 |
---tcagttctacgactatactnnnnnnntatgatctgatccaaatacgtgcggttatttggatcgatttttagatattcaaaatgcaacatgtaatgtt |
311 |
Q |
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| T |
23481646 |
ggttcagttgtacgactatactaaaaaaatatgatctgatccaaatacgtgcggttatttggatcgatttttagatattcaaaatgcaacatgtaataat |
23481745 |
T |
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| Q |
312 |
tgtattaatattcatctcac |
331 |
Q |
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| T |
23481746 |
tgtattaatattcatatcac |
23481765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 29772620 - 29772561
Alignment:
| Q |
243 |
tgatctgatccaaatacgtgcggtt--atttggatcgatttttagatattcaaaatgcaa |
300 |
Q |
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| T |
29772620 |
tgatctgatccaaatatatgcggtttaatttggatcggtttttggatattcaaaatgcaa |
29772561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 47975330 - 47975394
Alignment:
| Q |
244 |
gatctgatccaaatacgtgcggtt--atttggatcgatttttagatattcaaaatgcaacatgta |
306 |
Q |
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| T |
47975330 |
gatctgatccaaatatatgcggtttgatttggatcggtttttggacatccaaaatgcaacatgta |
47975394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 28655963 - 28655931
Alignment:
| Q |
268 |
atttggatcgatttttagatattcaaaatgcaa |
300 |
Q |
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| T |
28655963 |
atttggatcgatttttggatattcaaaatgcaa |
28655931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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