View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4071_high_2 (Length: 369)
Name: NF4071_high_2
Description: NF4071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4071_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 153 - 351
Target Start/End: Original strand, 12105380 - 12105578
Alignment:
| Q |
153 |
aacatacaagtatgtatcaatttatttcttttgtattattaacagcacatagaaggaagtttttggggggatggatactttggagaatatgagaatgaaa |
252 |
Q |
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| T |
12105380 |
aacatacaagtatgtatcaatttatttcttttgtattattaacagcacataaaaggaagtttttgggaggatggatactttggagaatatgagaatgaaa |
12105479 |
T |
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| Q |
253 |
agtggtcccatccaaaatctgttccaggttgcctttcatcacaccttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcaca |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12105480 |
agtggtcccatccaaaatctgttccaggttgcctttcatcaaaccttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcaca |
12105578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 12105251 - 12105352
Alignment:
| Q |
26 |
attgggatatagttacaagagtgttgtacctttgtagtaagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattt |
125 |
Q |
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|||||||||||||| ||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12105251 |
attgggatatagttccaagaatgctgcacctttgtcctaagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattt |
12105350 |
T |
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| Q |
126 |
aa |
127 |
Q |
| |
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|| |
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| T |
12105351 |
aa |
12105352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 1459373 - 1459312
Alignment:
| Q |
64 |
aagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattt |
125 |
Q |
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|||||||||| |||||| |||| ||||||||||||||||| ||||||||| ||||||||||| |
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| T |
1459373 |
aagcttcaaactcttgaactttatcaggtttgtttcttaattttaacaattatatttgattt |
1459312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 1446061 - 1445999
Alignment:
| Q |
63 |
taagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattt |
125 |
Q |
| |
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||||||||||||| |||| ||| ||||||||||||||||| |||||||||| |||||||||| |
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| T |
1446061 |
taagcttcaaaatattgaattttatcaggtttgtttcttaattttaacaatcgtatttgattt |
1445999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 965516 - 965454
Alignment:
| Q |
63 |
taagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattt |
125 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| |
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| T |
965516 |
taagcttcaaaatcttgaactttatcaggtttgtttgttaaatttaacaatcatattcgattt |
965454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 410269 - 410332
Alignment:
| Q |
63 |
taagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattta |
126 |
Q |
| |
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|||||||||||||||||| |||| || ||||||||| |||||||||| |||||||||||||||| |
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|
| T |
410269 |
taagcttcaaaatcttgaactttatcgggtttgtttgttaaatttaagaatcatatttgattta |
410332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 974062 - 974016
Alignment:
| Q |
63 |
taagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaa |
109 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
974062 |
taagcttcaaaatcttgacctttatcaggtttgtttgttaaatttaa |
974016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 821163 - 821226
Alignment:
| Q |
63 |
taagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattta |
126 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| || |||| ||||| |||| ||||||||||| |
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|
| T |
821163 |
taagcttcaaaatcttgaactttatcaggtttgcttgttaagtttaagaatcctatttgattta |
821226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 982131 - 982089
Alignment:
| Q |
63 |
taagcttcaaaatcttgacctttttcaggtttgtttcttaaat |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
982131 |
taagcttcaaaatcttgacctttatcaggtttgtttgttaaat |
982089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 45810537 - 45810474
Alignment:
| Q |
63 |
taagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattta |
126 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||| || ||||||||||| ||||||||||||||| |
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| T |
45810537 |
taagcttcaaagtctcgacctttatcaggtttgcttgttaaatttaacgatcatatttgattta |
45810474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 10116794 - 10116745
Alignment:
| Q |
67 |
cttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcat |
116 |
Q |
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|||||||||||||| |||| |||||||||||| ||||||||||||||||| |
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| T |
10116794 |
cttcaaaatcttgaactttatcaggtttgtttgttaaatttaacaatcat |
10116745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 351
Target Start/End: Complemental strand, 10116613 - 10116525
Alignment:
| Q |
263 |
tccaaaatctgttccaggttgcctttcatcacaccttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcaca |
351 |
Q |
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||||||| |||||||||||| ||||||||| |||||| ||||||||| || || || |||| | || |||||||||| ||||||||| |
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| T |
10116613 |
tccaaaaaatgttccaggttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcaca |
10116525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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