View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4071_high_5 (Length: 302)
Name: NF4071_high_5
Description: NF4071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4071_high_5 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 24899811 - 24899531
Alignment:
| Q |
15 |
agtttctacattcttcactaacaaacaaatcatgtgatatgacaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaagg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24899811 |
agtttctacattcttcactaacaaacaaatcatgtgatatgacaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaagg |
24899712 |
T |
|
| Q |
115 |
cctatcgatgaattatctttccccttgttgctctctgaagaagaacaattggctttgctttcactctctatctcgttcaacatannnnnnncgagctgtt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24899711 |
cctatcgatgaattatctttccccttgttgctctctgaagaagaacaattgactttgctttcactctctatctcgttcaacatatttttttcgagctgtt |
24899612 |
T |
|
| Q |
215 |
ctgtttctccgctctctatcatattcagcaatgcctctgatatgtcagcaactagacttgaaccttttggaaatacctatg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24899611 |
atgtttctccgctctctatcatattcagcaatgcctctgatatgtcagcaactagacttgaaccttttgggaatacctatg |
24899531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 24912057 - 24911777
Alignment:
| Q |
15 |
agtttctacattcttcactaacaaacaaatcatgtgatatgacaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaagg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||| |
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| T |
24912057 |
agtttctacattcttcactaacaaacaaatcatgtgatatgacaatgcaagaacagcaaaaatagaacagattgaaaacagaccaaggaaaggctgaagg |
24911958 |
T |
|
| Q |
115 |
cctatcgatgaattatctttccccttgttgctctctgaagaagaacaattggctttgctttcactctctatctcgttcaacatannnnnnncgagctgtt |
214 |
Q |
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||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24911957 |
cctatagatgaattatttttccccttgttgctctctaaagaagaacaattggctttgctttcactctctatctcgttcaacatatttttttcgagctgtt |
24911858 |
T |
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| Q |
215 |
ctgtttctccgctctctatcatattcagcaatgcctctgatatgtcagcaactagacttgaaccttttggaaatacctatg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24911857 |
ctgtttctccgctctctatcatattcagcaatgcctctgatatgtcagcaactagacttgaaccttttggaaatacctatg |
24911777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 24988738 - 24988459
Alignment:
| Q |
15 |
agtttctacattcttcactaacaaacaaatcatgtgatatgacaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaagg |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||| |
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| T |
24988738 |
agtttctacattcttcactaacaa-caaatcatgtgatatgacaacgcaagaatagcaaaaaaagaacagattgaaaacagagcaaggaaaggctgaagg |
24988640 |
T |
|
| Q |
115 |
cctatcgatgaattatctttccccttgttgctctctgaagaagaacaattggctttgctttcactctctatctcgttcaacatannnnnnncgagctgtt |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24988639 |
cctatcgatgaattatttttccccttgttgctctctaaagaagaacaattggctttgctttcactctctatctcgttcaacatatttttttcgagctgtt |
24988540 |
T |
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| Q |
215 |
ctgtttctccgctctctatcatattcagcaatgcctctgatatgtcagcaactagacttgaaccttttggaaatacctatg |
295 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24988539 |
ctgtttctccgctctctatcacattcagcaatgcctctgatatgtcagcaactagacttgaaccttttggaaatacctatg |
24988459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 24889383 - 24889320
Alignment:
| Q |
56 |
acaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggcctat |
119 |
Q |
| |
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||||| ||||||||||||| |||||||| |||||||||||| |||| ||||| ||| ||||||| |
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| T |
24889383 |
acaaatcaagaatagcaaatgtagaacatatcgaaaacagatcaagaaaaggtggacggcctat |
24889320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 142754 - 142481
Alignment:
| Q |
19 |
tctacattcttcactaacaaacaaatcatgtgatatgacaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggccta |
118 |
Q |
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|||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| |
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| T |
142754 |
tctacatttttcaccaacaaacaaatcacgtgatatgataaagcaagaatagcaaaagtcgaacagatcgaaaatagaccaaggaaaggcgaaaggccta |
142655 |
T |
|
| Q |
119 |
tcgatgaattatctttccccttgttgctctctgaagaagaacaattggctttgctttcactctctatctcgttcaacatannnnnnncgagctgttctgt |
218 |
Q |
| |
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| |||||||||| ||| ||| || |||||| |||||||||||||||||||||||||| |||| ||||| ||||||||| | || | |||||| |
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| T |
142654 |
tggatgaattattttttccc---tttctctctaaagaagaacaattggctttgctttcattctcaatctcattcaacatatctttttctagttcttctgt |
142558 |
T |
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| Q |
219 |
ttctccgctctctatcatattcagcaatgcctctgatatgtcagcaactagacttgaaccttttggaaatacctatg |
295 |
Q |
| |
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|||||| |||||||||||||||| || ||||||||||||||| || | ||||| |||||||||||||||||||||| |
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| T |
142557 |
ttctccactctctatcatattcaacactgcctctgatatgtctgccgcaagactcgaaccttttggaaatacctatg |
142481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 150698 - 150424
Alignment:
| Q |
19 |
tctacattcttcactaacaaacaaatcatgtgatatgacaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggccta |
118 |
Q |
| |
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|||| ||||||||| |||||||| || |||||||||||||| |||||||||| ||||||||| ||||||||||||| |||| |||||||||||| |||| |
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| T |
150698 |
tctatattcttcaccaacaaacagataatgtgatatgacaatgcaagaatagaaaaagtagagcagatcgaaaacaagccaatgaaaggcggaagaccta |
150599 |
T |
|
| Q |
119 |
tcgatgaattatctttccccttgttgctctctgaagaagaacaattggctttgctttcactctctatctcgttcaacatannnnnnncgagctgttctgt |
218 |
Q |
| |
|
|||| ||||||| |||||||||||| || ||| ||||||||||||||| ||||| | | ||| ||||| | |||||||| | || | |||||| |
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|
| T |
150598 |
tcgaggaattatttttccccttgtttctttctaaagaagaacaattggttttgcctcctctccctatcccattcaacatgtctttttctagtttttctgt |
150499 |
T |
|
| Q |
219 |
ttctccgctctctatcatattcagcaatgcctctgatatgtcagcaactagacttgaaccttttggaaataccta |
293 |
Q |
| |
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|| ||| |||||||||||||| || |||||||||||||| || | | | ||||| |||||||| ||||||||||| |
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| T |
150498 |
ttttccactctctatcatatttagtaatgcctctgatatatcggtagccagactcgaacctttaggaaataccta |
150424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 25003 - 24811
Alignment:
| Q |
15 |
agtttctac-attcttcactaacaaacaaa-tcatgtgatatgacaaagcaagaatag-caaaagtagaac-agatcgaaaacagaccaaggaaa-ggcg |
109 |
Q |
| |
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||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||| ||||| ||||| |||| ||||||||| |||||||| ||| |
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| T |
25003 |
agtttctactattcttcactaaacaacaaaatcatgtgatatgacaacgcaagaatagacaaaaaaagaacaagattgaaaacagagcaaggaaagggct |
24904 |
T |
|
| Q |
110 |
gaaggcctatcgatgaa-ttatcttt--cccctt--gttgctctct-gaagaagaacaa-ttggcttt--gctttcactctctatctcgttca |
193 |
Q |
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||||||||||||||||| |||| ||| |||||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
24903 |
gaaggcctatcgatgaatttattttttccccctttgtttgctctctaaaagaagaacaatttggctttagtctttcactctctatctcgttca |
24811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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