View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4071_low_1 (Length: 451)
Name: NF4071_low_1
Description: NF4071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4071_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 12 - 433
Target Start/End: Original strand, 50465059 - 50465481
Alignment:
| Q |
12 |
agagagactaagaaaattttgctagtagtagcttatatgaaccgaagaaaagaaggtgaattcttgtgatgtttttaaagagggaacggttgcatcacgc |
111 |
Q |
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| T |
50465059 |
agagagactaagaaaattttgctagtagtagcttatatgaaccgaagaaaagaaggtgaattcttgtgatgtttttaaagagggaacggttgcatcacgc |
50465158 |
T |
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| Q |
112 |
atactgtatctatttattagaaaaggatggttttgagatctnnnnnnnctaggctctgtatttattaagaacttctttttattgtttttacctcatatac |
211 |
Q |
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| T |
50465159 |
atactgtatctatttattagaaaaggatggttttgagatctaaaaaaactaggctctgtatttattaggaacttctttttattgtttttacctcatatac |
50465258 |
T |
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| Q |
212 |
tatatatccctgtcacattcaataaataacccgtcatttggatagagggagagataccatatgatatttctgcttttcacccaataatttatatgtaaag |
311 |
Q |
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| T |
50465259 |
tatatatccctgtcacattcaataaataacccgtcatttggatagagggagagataccatatgatatttctgcttttcacccaataatttatatgtaaag |
50465358 |
T |
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| Q |
312 |
a-nnnnnnnnnacggttaattaacccattaaatcattaatcacatttaactttaatcataattacttctaaaagtcacatgtatgattagttgtgacaat |
410 |
Q |
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| T |
50465359 |
attttttttttacggttaattaacccgttaaatcattaatcacatttaactttaatattaattacttctaaaaatcacgtgtatgattagttgtgataat |
50465458 |
T |
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| Q |
411 |
gtaaaaaccgtctcacgcaatat |
433 |
Q |
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| T |
50465459 |
gtaaaaaccgtctcacgcaatat |
50465481 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 398
Target Start/End: Original strand, 26491773 - 26491837
Alignment:
| Q |
332 |
aacccattaaatcattaatcacatttaactttaatcataattacttctaaaagtcacatgtatgatt |
398 |
Q |
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| T |
26491773 |
aaccctttaaattattaatcacatttaaattttatcataatcacttctcaa--tcacatgtatgatt |
26491837 |
T |
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