View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4071_low_12 (Length: 238)

Name: NF4071_low_12
Description: NF4071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4071_low_12
NF4071_low_12
[»] chr5 (10 HSPs)
chr5 (1-230)||(30445309-30445538)
chr5 (1-230)||(30454681-30454910)
chr5 (1-230)||(30459739-30459968)
chr5 (1-230)||(18568517-18568746)
chr5 (1-230)||(24412307-24412536)
chr5 (1-210)||(22488686-22488894)
chr5 (1-230)||(24421767-24421985)
chr5 (1-230)||(4635442-4635670)
chr5 (27-201)||(24278813-24278987)
chr5 (27-201)||(24383227-24383401)
[»] scaffold0482 (1 HSPs)
scaffold0482 (1-230)||(3012-3241)
[»] chr8 (1 HSPs)
chr8 (1-230)||(7789558-7789787)
[»] scaffold0028 (2 HSPs)
scaffold0028 (1-230)||(94911-95140)
scaffold0028 (1-230)||(104352-104581)
[»] chr7 (4 HSPs)
chr7 (1-230)||(7592485-7592714)
chr7 (1-230)||(15172798-15173027)
chr7 (1-230)||(4118904-4119133)
chr7 (1-230)||(15202224-15202453)
[»] chr6 (3 HSPs)
chr6 (1-230)||(18420031-18420260)
chr6 (1-230)||(23896096-23896325)
chr6 (1-130)||(14101770-14101899)
[»] chr4 (8 HSPs)
chr4 (1-230)||(3242767-3242996)
chr4 (1-230)||(3917545-3917774)
chr4 (1-230)||(26811987-26812216)
chr4 (1-230)||(26821454-26821683)
chr4 (1-230)||(54690393-54690622)
chr4 (1-230)||(54699824-54700053)
chr4 (1-230)||(37058566-37058795)
chr4 (1-230)||(15843377-15843605)
[»] chr3 (8 HSPs)
chr3 (1-230)||(28352201-28352430)
chr3 (1-230)||(28368134-28368362)
chr3 (1-230)||(28375952-28376180)
chr3 (1-230)||(28383774-28384002)
chr3 (1-230)||(38529617-38529846)
chr3 (1-141)||(4951164-4951304)
chr3 (1-103)||(7784636-7784738)
chr3 (1-99)||(27168983-27169081)
[»] scaffold0040 (2 HSPs)
scaffold0040 (1-230)||(31287-31516)
scaffold0040 (1-197)||(9559-9754)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-230)||(412777-413006)
[»] scaffold0233 (1 HSPs)
scaffold0233 (1-230)||(26584-26812)
[»] chr2 (3 HSPs)
chr2 (1-209)||(24023221-24023428)
chr2 (1-165)||(14272600-14272764)
chr2 (1-230)||(31710945-31711162)
[»] chr1 (2 HSPs)
chr1 (1-201)||(15810460-15810659)
chr1 (1-144)||(41000857-41001003)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30445309 - 30445538
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
30445309 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctta 30445408  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30445409 aaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 30445508  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
30445509 tataacttgcagcccacttctgatgatgtc 30445538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30454681 - 30454910
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
30454681 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctta 30454780  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30454781 aaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 30454880  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
30454881 tataacttgcagcccacttctgatgatgtc 30454910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30459739 - 30459968
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
30459739 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctta 30459838  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30459839 aaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 30459938  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
30459939 tataacttgcagcccacttctgatgatgtc 30459968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 18568746 - 18568517
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
18568746 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctta 18568647  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18568646 aaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 18568547  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    | |||||||||| |||||| ||||||||||    
18568546 tgtaacttgcagtccacttctgatgatgtc 18568517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24412536 - 24412307
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
24412536 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 24412437  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
24412436 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 24412337  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
24412336 tataacttgcagcccacttctgatgatgtc 24412307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 22488894 - 22488686
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
22488894 ataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 22488795  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
22488794 aaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgc-ttgcttgcacatgagataaccagctgtaatgagctg 22488696  T
201 tataacttgc 210  Q
    ||||||||||    
22488695 tataacttgc 22488686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24421985 - 24421767
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
24421985 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgctggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 24421886  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    |||||||            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
24421885 aaaatag-----------ccagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 24421797  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
24421796 tataacttgcagcccacttctgatgatgtc 24421767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4635670 - 4635442
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||| |||||||||||||| ||||||| |||||||||||||    
4635670 ataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggatgcgtttttgatagttgtccaaagtctcaattgatttttcttttcttcttt 4635571  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    |||||||  |||| ||| ||| |||||||||||||||||||||| ||||||||||||| |||| |||||||||| ||||| |||||| ||||||||| ||    
4635570 aaaatagctagaatgttctcaaaatgttctttctgatttgcctggctttgaaagcactattgc-ttgcttgcgcgtgagagaaccagttgtaatgagttg 4635472  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    |||||||||  || ||||  ||||||||||    
4635471 tataacttgttgcgcactgctgatgatgtc 4635442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 24278813 - 24278987
Alignment:
27 agggagaaaatagagctgttggacacgtttt-tgatagctgtccaaagtctcatttgatttctcttttcttcttt-aaaatagtcagaacgttttcagaa 124  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||| ||||||| ||||||||| ||| ||    
24278813 agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa 24278911  T
125 tgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgt 201  Q
    |||| | |||||||||||| ||||||   ||| |||||| ||||||| ||||||||  ||||| |||||||| ||||    
24278912 tgttgtgtctgatttgcctaactttgcttgcattgttgc-ttgcttgtgcatgagagtaccagttgtaatgaactgt 24278987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 24383401 - 24383227
Alignment:
27 agggagaaaatagagctgttggacacgttttt-gatagctgtccaaagtctcatttgatttctcttttcttcttt-aaaatagtcagaacgttttcagaa 124  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||| ||||||| ||||||||| ||| ||    
24383401 agggagaaaatagagttgttggacacgttttttgatagctgtccaaaatctcagttgatttctctcttcttctttaaaaatagccagaacgttctca-aa 24383303  T
125 tgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctgt 201  Q
    |||| | |||||||||||| ||||||   ||| |||||| ||||||| ||||||||  ||||| |||||||| ||||    
24383302 tgttgtgtctgatttgcctaactttgcttgcattgttgc-ttgcttgtgcatgagagtaccagttgtaatgaactgt 24383227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3241 - 3012
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
3241 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgatttctcttttcttcttt 3142  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3141 aaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 3042  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
3041 tataacttgcagcccacttctgatgatgtc 3012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 7789558 - 7789787
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
7789558 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtatcttttgatttctcttttcttcttt 7789657  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7789658 aaaatagccagaacgttctcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 7789757  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
7789758 tataacttgcagcccacttctgatgatgtc 7789787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 94911 - 95140
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
94911 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 95010  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
95011 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 95110  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
95111 tataacttgcagcccacttctgatgatgtc 95140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 104352 - 104581
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
104352 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 104451  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
104452 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 104551  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
104552 tataacttgcagcccacttctgatgatgtc 104581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 7592714 - 7592485
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
7592714 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 7592615  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
7592614 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 7592515  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
7592514 tataacttgcagcccacttctgatgatgtc 7592485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 15173027 - 15172798
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
15173027 ataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 15172928  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
15172927 aaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctataatgagctg 15172828  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    |||||||||| || ||||| ||||||||||    
15172827 tataacttgctgctcacttctgatgatgtc 15172798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4118904 - 4119133
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
4118904 ataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 4119003  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
4119004 aaaatagccaaaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctttaatgagctg 4119103  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    |||||||||  || ||||| ||||||||||    
4119104 tataacttgttgctcacttctgatgatgtc 4119133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 15202453 - 15202224
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
15202453 ataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 15202354  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |  ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
15202353 aaaatagccagaacgttctatgaatgttctttctgatttgtctggctttaaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagttg 15202254  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    |||||||||| |||||||| ||||||||||    
15202253 tataacttgctgcccacttctgatgatgtc 15202224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 18420260 - 18420031
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
18420260 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 18420161  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
18420160 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 18420061  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
18420060 tataacttgcagcccacttctgatgatgtc 18420031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23896096 - 23896325
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
23896096 ataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgtttttgatagttgtccaaagtctcaattgatttctcttttcttcttt 23896195  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23896196 aaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 23896295  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    |||||||||| |||||||| ||||||||||    
23896296 tataacttgctgcccacttctgatgatgtc 23896325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 14101899 - 14101770
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||| |||||||| |||| | |||||||||| ||||||| |||||||||  ||||||||||||  ||| |||||||| ||||||||| ||    
14101899 ataggtgaggagtgccttggtgatcaagagtgaaaatagagttgttggatacgtttttggcagctgtccaaagcttcaattgatttcacttttcttcatt 14101800  T
101 aaaatagtcagaacgttttcagaatgttct 130  Q
    ||||  |  |||||||| ||||||||||||    
14101799 aaaacgggaagaacgttctcagaatgttct 14101770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3242767 - 3242996
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
3242767 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 3242866  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
3242867 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 3242966  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
3242967 tataacttgcagcccacttctgatgatgtc 3242996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3917774 - 3917545
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
3917774 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 3917675  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
3917674 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 3917575  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
3917574 tataacttgcagcccacttctgatgatgtc 3917545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26812216 - 26811987
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
26812216 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 26812117  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
26812116 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 26812017  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
26812016 tataacttgcagcccacttctgatgatgtc 26811987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26821683 - 26821454
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
26821683 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 26821584  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
26821583 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 26821484  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
26821483 tataacttgcagcccacttctgatgatgtc 26821454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 54690393 - 54690622
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
54690393 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 54690492  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
54690493 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 54690592  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
54690593 tataacttgcagcccacttctgatgatgtc 54690622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 54699824 - 54700053
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
54699824 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 54699923  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
54699924 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 54700023  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
54700024 tataacttgcagcccacttctgatgatgtc 54700053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37058795 - 37058566
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
37058795 ataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 37058696  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
37058695 aaaatagccagaacgttctcaaaatgttctttctgatttgcctggctttgaaagcactgttgttttgcttgcgcatgagataaccagctgtaatgagctg 37058596  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||   |||||||| ||||||||||    
37058595 tataactttgtgcccacttctgatgatgtc 37058566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15843377 - 15843605
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||    
15843377 ataggtgaggagtgtcttggtgatcaagggagaaaatagagctgttggacacgttttttatagctgttcaaagtctcaattgatttctcttttcttcttt 15843476  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| || |||||| ||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
15843477 aaaatagccataacgttctcataatgttctttctgatttgcctggctttgaaagcactgttgc-ttgcttgcgcatgagataaccagctgtaatgagctg 15843575  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||| |||| ||||| |  ||||||||||    
15843576 tataatttgctgcccaatgctgatgatgtc 15843605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28352201 - 28352430
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
28352201 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 28352300  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||    
28352301 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagttg 28352400  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
28352401 tataacttgcagcccacttctgatgatgtc 28352430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28368134 - 28368362
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
28368134 ataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 28368232  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
28368233 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 28368332  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
28368333 tataacttgcagcccacttctgatgatgtc 28368362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28375952 - 28376180
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
28375952 ataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 28376050  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
28376051 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 28376150  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
28376151 tataacttgcagcccacttctgatgatgtc 28376180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28383774 - 28384002
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
28383774 ataggtgaggagtgtcttggt-accaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 28383872  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
28383873 aaaatagccagaacgttctcagaatgttctttctgatttgcctgacttagaaagcactgttgctttgcttgcgcatgagataaccagctgtgatgagctg 28383972  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    ||||||||||||||||||| ||||||||||    
28383973 tataacttgcagcccacttctgatgatgtc 28384002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 38529617 - 38529846
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttc-tcttttcttctt 99  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |||||||| | ||||||||||    
38529617 ataggcgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgttttttatagttgtccaaagtctcaattgatttctttttttcttctt 38529716  T
100 taaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagct 199  Q
    |||||||| |||| |||| |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |    
38529717 taaaatagccagaccgttctcagaatgttctttctgaattgtctgactttgaaagcactgttgc-ttgcttgcgcgtgagagaaccagctgtaatgagtt 38529815  T
200 gtataacttgcagcccacttatgatgatgtc 230  Q
    || |||||||  ||||| |  ||||||||||    
38529816 gtttaacttgttgcccaatgttgatgatgtc 38529846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 4951304 - 4951164
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||     
4951304 ataggtgaggagtgtcttggtgatcaagggagaaactagagttgttggacacgtttttgataactgtctaaagtctcaattgatttctcttttcttctta 4951205  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgc 141  Q
    |||||||  |||||||| ||| |||||| | ||||||||||    
4951204 aaaataggaagaacgttctcataatgttatgtctgatttgc 4951164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7784636 - 7784738
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||| |||| |||||||| |||| | |||||||| | ||||||||| |||||||  |||| |||||||  ||| |||||||| ||||||||||||    
7784636 ataggtgagcagtgccttggtgatcaagagtgaaaatagtgttgttggacatgtttttggcagctttccaaagcttcaattgatttcacttttcttcttt 7784735  T
101 aaa 103  Q
    |||    
7784736 aaa 7784738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 27169081 - 27168983
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttctt 99  Q
    |||||||||||||| |||||||| |||| | |||||||||| ||||||||||||||     |||||||||| |  ||| |||||||| |||||||||||    
27169081 ataggtgaggagtgacttggtgatcaagagtgaaaatagaggtgttggacacgtttagtgcagctgtccaacgattcaattgatttcacttttcttctt 27168983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 31287 - 31516
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
31287 ataggtgaggagtgtcttggtgaacaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 31386  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
31387 aaaatagccagaacgttctcagaatgttctttctgatttgcctggctttgaaagcactgttgctttgcttgcacatgagataaccagctgtaatgagctg 31486  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    |||||||||| |||||||| ||||||||||    
31487 tataacttgctgcccacttctgatgatgtc 31516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 9754 - 9559
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| |||||| |||||||||| || ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||     
9754 ataggtgaggagtgtcttggtgatcaagggtgaaaatagagttgatggacacatttttgatagctgtccaaagtctcatttgttttcacttttcttctta 9655  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgag 197  Q
    |||||||  |||||||| |||||||||||| ||||||||||||  |||||   || ||||||| |||||||||  ||| | |||||||| |||||||    
9654 aaaatagctagaacgttctcagaatgttctgtctgatttgcctagctttgcttgctctgttgc-ttgcttgcgagtgaaagaaccagctataatgag 9559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 413006 - 412777
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||    
413006 ataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggactcttttttgatagctgtccaaagtctcaattgatttctcttttcttcttt 412907  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
412906 aaaatagccagaacgttctcataatgttctttctgatttgtctgactttgaaagcactattgctttgcttgcacatgagataaccagctgtaatgagctg 412807  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    |||||||||| |||||||| ||||||||||    
412806 tataacttgctgcccacttctgatgatgtc 412777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 26584 - 26812
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||    
26584 ataggtgaggagtgtcttggtgatcaagggagaaaatagagatgttggacacatttttgatagctatccaaagtctcaattgatttctcttttcttcttt 26683  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |||  |||||||||| ||| ||||||||||||||||    
26684 aaaatagccagaacgttctcagaatgttctttctgatttgtctggctttgaaagcactgttgc-ttgtatgcgcatgagttaatcagctgtaatgagctg 26782  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    |||||||||| ||||| |  ||||||||||    
26783 tataacttgctgcccaatgctgatgatgtc 26812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24023221 - 24023428
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
24023221 ataggtgaggagtgtcttagtgatcaagggagaaaatagagttgttggacacgtttttgatagctatccaaagtctcaattgatttctcttttcttcttt 24023320  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||||||| | |||||||||| ||||| |||||| |||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||    
24023321 aaaatagccagaacgttcttagaatgttctgtctgaattgccttactttgaaagcactgttgcttt-cttgcgcgtgagagaaccaactgtaatgagctg 24023419  T
201 tataacttg 209  Q
    | |||||||    
24023420 tttaacttg 24023428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 14272764 - 14272600
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||     
14272764 ataggtgaggagtgtcttggtgatcaagggagaaaatagagttgttggacacgtttttgatagctgtccaaagtctcaattgatttctcttttctactta 14272665  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctt 165  Q
     |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||    
14272664 taaatagccagaacgttttcagaatgttctgtctgaattgcctaactttgaaagcattgttgctt 14272600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 31710945 - 31711162
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||     
31710945 ataggtgaggagtgtcttggtgatcaagtgagaaaatagagttgttggacgcgtttttgatagttgtccaaagtctcaattgatttctcttttcttctta 31711044  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    |||||||            |||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||    
31711045 aaaatag-----------ccagaatgttctttctgattttcctggctttgaaagcactgttgc-ttgcttgcgcgtgagagaaccagttgtaatgagctg 31711132  T
201 tataacttgcagcccacttatgatgatgtc 230  Q
    |||||||||  ||||| |  ||||||||||    
31711133 tataacttgttgcccaatgctgatgatgtc 31711162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 15810460 - 15810659
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttgatagctgtccaaagtctcatttgatttctcttttcttcttt 100  Q
    |||||||| |||||||||||||| ||| || | |||||||| |||||||||| ||||||||||||||||||||||  | ||||||||  ||||||||||     
15810460 ataggtgatgagtgtcttggtgatcaatggtgcaaatagagttgttggacacatttttgatagctgtccaaagtcctaattgatttcatttttcttctta 15810559  T
101 aaaatagtcagaacgttttcagaatgttctttctgatttgcctgactttgaaagcactgttgctttgcttgcgcatgagataaccagctgtaatgagctg 200  Q
    ||||||| ||||| | | |||||||||| | |||||||||| | ||||||   |||||||||| |||||||||  ||||| |||||||||||||||||||    
15810560 aaaatagacagaatgatctcagaatgttatgtctgatttgcataactttgcttgcactgttgc-ttgcttgcgagtgagagaaccagctgtaatgagctg 15810658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 41000857 - 41001003
Alignment:
1 ataggtgaggagtgtcttggtgaccaagggagaaaatagagctgttggacacgtttttg---atagctgtccaaagtctcatttgatttctcttttcttc 97  Q
    |||||||||||||| |||||||| |||| | |||||||||| ||||||||||||||||    |||| ||||||||||||||||||||||| |||||||||    
41000857 ataggtgaggagtgccttggtgatcaagagtgaaaatagagatgttggacacgtttttttttatagatgtccaaagtctcatttgatttcacttttcttc 41000956  T
98 tttaaaatagtcagaacgttttcagaatgttctttctgatttgcctg 144  Q
    || ||| | | ||||| | | |||||||||| | |||||||||||||    
41000957 ttaaaattgggcagaaagatctcagaatgttatgtctgatttgcctg 41001003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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