View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4071_low_3 (Length: 401)

Name: NF4071_low_3
Description: NF4071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4071_low_3
NF4071_low_3
[»] chr1 (8 HSPs)
chr1 (14-263)||(36608092-36608332)
chr1 (310-383)||(36608380-36608453)
chr1 (163-218)||(36668509-36668564)
chr1 (175-218)||(50476694-50476737)
chr1 (169-218)||(38795278-38795327)
chr1 (135-211)||(39508941-39509018)
chr1 (158-218)||(1278635-1278694)
chr1 (135-218)||(49102806-49102890)
[»] chr3 (4 HSPs)
chr3 (129-212)||(40118726-40118809)
chr3 (167-218)||(3537372-3537423)
chr3 (187-218)||(41703035-41703066)
chr3 (135-218)||(5939612-5939696)
[»] scaffold0927 (1 HSPs)
scaffold0927 (167-212)||(2772-2817)
[»] chr5 (2 HSPs)
chr5 (160-212)||(41923331-41923384)
chr5 (162-218)||(22114872-22114928)
[»] chr6 (1 HSPs)
chr6 (193-254)||(4465037-4465102)
[»] chr2 (5 HSPs)
chr2 (168-212)||(16518954-16518998)
chr2 (129-218)||(7367744-7367834)
chr2 (163-212)||(38325279-38325328)
chr2 (135-218)||(1364989-1365073)
chr2 (148-212)||(21300536-21300599)
[»] chr8 (2 HSPs)
chr8 (166-217)||(10483016-10483067)
chr8 (162-218)||(43438166-43438221)
[»] chr7 (4 HSPs)
chr7 (135-209)||(42112789-42112864)
chr7 (158-216)||(17884049-17884107)
chr7 (166-218)||(3591828-3591880)
chr7 (135-218)||(38505175-38505259)
[»] chr4 (4 HSPs)
chr4 (158-218)||(38644652-38644713)
chr4 (137-218)||(46176772-46176852)
chr4 (217-254)||(47047414-47047451)
chr4 (135-218)||(50784189-50784273)
[»] scaffold0245 (1 HSPs)
scaffold0245 (158-218)||(4312-4371)
[»] scaffold0229 (1 HSPs)
scaffold0229 (158-218)||(4643-4702)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 36608092 - 36608332
Alignment:
Q  14 gattctctcttgtctcaaattcggtggactaatttggtttcttagaaaagaagatatttcaattgtttgattttgatcctttgagattgattgcgctaat 113  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36608092 gattctctcttgtctcaagttcggtggactaatttgatttcttagaaaagaagatatttcaattgtttgattttgatcctttgagattgattgcgctaat 36608191  T
Q  114 tggacacccttactcgtttcagagtttggaagggagggaaaagtagggctttgggggtggaaaatataaagagaaatgaagaaatctttcacatttttta 213  Q
    || ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||         ||||||||    
T  36608192 tgaacacccttattcgtttcggagtttggaagggaggggaaagtagggctttgggggtgggaaatataaagggaaatgaagaa---------atttttta 36608282  T
Q  214 aaagataagttaatgttcatgattgatatatttttaattttcaaactatc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36608283 aaagataagttaatgttcatgattgatatatttttaattttcaaactatc 36608332  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 36608380 - 36608453
Alignment:
Q  310 caatgacataatttcctctatgccgaagatgcaactcttttgaagaaaccttccttcagtgcatgccctctttc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36608380 caatgacataatttcctctatgccgaagatgcaactcttttgaagaaaccttccttcagtgcatgccctctttc 36608453  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 36668509 - 36668564
Alignment:
Q  163 tttgggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    |||||| |||||||||||| ||||||||| |||||  ||||||||||||| |||||    
T  36668509 tttgggagtggaaaatatacagagaaatggagaaaattttcacattttttgaaaga 36668564  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 50476737 - 50476694
Alignment:
Q  175 aaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    ||||||| ||||||||| |||||||||||||||||||| |||||    
T  50476737 aaatatatagagaaatggagaaatctttcacattttttgaaaga 50476694  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 38795278 - 38795327
Alignment:
Q  169 ggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    |||||||||||| | |  |||||||||||||||||| |||||||||||||    
T  38795278 ggtggaaaatatgagggaaaatgaagaaatctttcaaattttttaaaaga 38795327  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 39509018 - 39508941
Alignment:
Q  135 gagtttggaagggagggaaaagtagggctttgggg-gtggaaaatataaagagaaatgaagaaatctttcacattttt 211  Q
    ||||||||| ||||||| || | || ||||||| | |||| ||||||| ||| ||||||| |||||||||||||||||    
T  39509018 gagtttggaggggaggggaagggagagctttggcgagtgggaaatatatagaaaaatgaaaaaatctttcacattttt 39508941  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 1278694 - 1278635
Alignment:
Q  158 agggctttgggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    |||||||||||||| ||||| ||| || || ||| |||||||| |||||||||||||||||    
T  1278694 agggctttgggggttgaaaa-atagagggatatggagaaatctatcacattttttaaaaga 1278635  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 49102806 - 49102890
Alignment:
Q  135 gagtttggaagggagggaaaagtagggctttgggggtgga-aaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    ||||||||| ||||||| || | |||||||||||||  || |||||||  || ||||  |||||||||||||||||||| |||||    
T  49102806 gagtttggaggggaggggaaggaagggctttggggggagagaaatatagggaaaaattgagaaatctttcacattttttgaaaga 49102890  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 40118726 - 40118809
Alignment:
Q  129 gtttcagagtttggaagggagggaaaagtagggctttgggggtggaaaatataaagagaaatgaagaaatctttcacatttttt 212  Q
    |||| |||||||||| || |||| || | |||||||||||||||  ||||||  || |||||| ||||||||||||||||||||    
T  40118726 gtttgagagtttggagggtaggggaaggaagggctttgggggtgagaaatatcgagggaaatggagaaatctttcacatttttt 40118809  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 3537423 - 3537372
Alignment:
Q  167 ggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    |||||||||||||| | |  |||||||||||||||||| |||||||||||||    
T  3537423 ggggtggaaaatatgagggaaaatgaagaaatctttcaaattttttaaaaga 3537372  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 218
Target Start/End: Original strand, 41703035 - 41703066
Alignment:
Q  187 aaatgaagaaatctttcacattttttaaaaga 218  Q
    ||||||||||||||||||||||||||||||||    
T  41703035 aaatgaagaaatctttcacattttttaaaaga 41703066  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 5939612 - 5939696
Alignment:
Q  135 gagtttggaagggagggaaaagtagggctttg-ggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    ||||||||| |||| ||||| | | ||||||| |||||| ||||||||| || | ||  |||||||||||| |||||||||||||    
T  5939612 gagtttggaggggaaggaaaggaaaggctttgaggggtgcaaaatataaggaaatatagagaaatctttcaaattttttaaaaga 5939696  T

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Target: scaffold0927 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 2772 - 2817
Alignment:
Q  167 ggggtggaaaatataaagagaaatgaagaaatctttcacatttttt 212  Q
    |||||||||| |||| || |||||||||||||||||||||||||||    
T  2772 ggggtggaaagtatagagggaaatgaagaaatctttcacatttttt 2817  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 41923384 - 41923331
Alignment:
Q  160 ggctttgggggtggaaaatataaagagaaat-gaagaaatctttcacatttttt 212  Q
    |||||||||||||| ||||||| |||||||| ||| ||||||||||||||||||    
T  41923384 ggctttgggggtgggaaatatagagagaaatagaaaaaatctttcacatttttt 41923331  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 22114928 - 22114872
Alignment:
Q  162 ctttgggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    |||||||||||  ||||| | ||| ||||| |||||||||||||||||||| |||||    
T  22114928 ctttgggggtgagaaatacatagaaaaatggagaaatctttcacatttttttaaaga 22114872  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 4465102 - 4465037
Alignment:
Q  193 agaaatctttcacattttttaaaaga----taagttaatgttcatgattgatatatttttaatttt 254  Q
    |||||||||||||||||||| |||||    ||| |||||||| |||||| ||||||||||||||||    
T  4465102 agaaatctttcacatttttttaaagaatgataaattaatgtttatgattaatatatttttaatttt 4465037  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 16518954 - 16518998
Alignment:
Q  168 gggtggaaaatataaagagaaatgaagaaatctttcacatttttt 212  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  16518954 gggtggtaaatacaaagagaaatggagaaatctttcacatttttt 16518998  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 7367834 - 7367744
Alignment:
Q  129 gtttcagagtttggaagggagggaaaagtagggctttgggg-gtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    |||| |||||||||| ||||| | || | | |||||| ||| ||||||||||| | |  |||||||||||||||||||||||||| |||||    
T  7367834 gtttgagagtttggaggggagtggaagggaaggctttagggagtggaaaatatgagggaaaatgaagaaatctttcacatttttttaaaga 7367744  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 38325328 - 38325279
Alignment:
Q  163 tttgggggtggaaaatataaagagaaatgaagaaatctttcacatttttt 212  Q
    ||||||||||||||||||| ||  ||||| | ||||||||||||||||||    
T  38325328 tttgggggtggaaaatatagaggaaaatggaaaaatctttcacatttttt 38325279  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 1365073 - 1364989
Alignment:
Q  135 gagtttggaagggagggaaaagtagggctttg-ggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    ||||||||| |||| ||||| | | ||||||| |||||| ||||||| |||| ||||  ||||||||| || |||||||||||||    
T  1365073 gagtttggaggggaaggaaaggaaaggctttgaggggtgcaaaatatgaagaaaaatagagaaatcttacaaattttttaaaaga 1364989  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 21300536 - 21300599
Alignment:
Q  148 agggaaaagtagggctttgggggtggaaaatataaagagaaatgaagaaatctttcacatttttt 212  Q
    ||||||||| |||||||||| | ||||||||| | ||| |||| ||||||||| |||||||||||    
T  21300536 agggaaaag-agggctttggagctggaaaatacagagaaaaattaagaaatctatcacatttttt 21300599  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 10483016 - 10483067
Alignment:
Q  166 gggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaag 217  Q
    |||||||| |||||||| | ||||||||||||||||| ||||||||| ||||    
T  10483016 gggggtgggaaatataaggggaaatgaagaaatcttttacattttttgaaag 10483067  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 43438166 - 43438221
Alignment:
Q  162 ctttgggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    ||||||||||||||||||| ||| |||||  | |||||||||||||||||| |||||    
T  43438166 ctttgggggtggaaaatat-aagggaaatacataaatctttcacatttttttaaaga 43438221  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 42112789 - 42112864
Alignment:
Q  135 gagtttggaagggagggaaaagtagggcttt-gggggtggaaaatataaagagaaatgaagaaatctttcacattt 209  Q
    ||||||||| ||||||| || | |||| ||| |||||||| || |||| ||||||||| |||||||||||||||||    
T  42112789 gagtttggaggggaggggaaggaagggttttagggggtgggaagtatagagagaaatggagaaatctttcacattt 42112864  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 17884049 - 17884107
Alignment:
Q  158 agggctttgggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaa 216  Q
    ||||||||  ||||||||||||| | || |||| || ||||||||||||||||||||||    
T  17884049 agggctttaagggtggaaaatatgaggaaaaataaataaatctttcacattttttaaaa 17884107  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 3591880 - 3591828
Alignment:
Q  166 gggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    |||| ||| ||||||| ||| ||||| |||||||||||||||||||| |||||    
T  3591880 ggggatgggaaatatatagaaaaatggagaaatctttcacattttttgaaaga 3591828  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 38505175 - 38505259
Alignment:
Q  135 gagtttggaagggagggaaaagtagggctttg-ggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    ||||||||| ||||||| || | | ||||||| |||||||||||| | | |  ||||| |||||||||||| |||||||||||||    
T  38505175 gagtttggaggggaggggaagggaaggctttgaggggtggaaaatttgagggaaaatggagaaatctttcaaattttttaaaaga 38505259  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 38644713 - 38644652
Alignment:
Q  158 agggctttgggggtgga-aaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    |||||||||||||  || ||||||||| | ||||| |||||||||||||||||||| |||||    
T  38644713 agggctttgggggatgagaaatataaaaaaaaatggagaaatctttcacattttttgaaaga 38644652  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 46176772 - 46176852
Alignment:
Q  137 gtttggaagggagggaaaagtagggctttgggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    ||||||| ||||||| || | | | |||||||||||||||||| | || |||||| ||||||| |||||||||||| |||||    
T  46176772 gtttggaggggaggggaagggaagactttgggggtggaaaataaagagggaaatggagaaatc-ttcacattttttgaaaga 46176852  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 47047451 - 47047414
Alignment:
Q  217 gataagttaatgttcatgattgatatatttttaatttt 254  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  47047451 gataaattaatgtttatgattgatatatttttaatttt 47047414  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 50784189 - 50784273
Alignment:
Q  135 gagtttggaagggagggaaaagtagggctttg-ggggtggaaaatataaagagaaat-gaagaaatctttcacattttttaaaaga 218  Q
    ||||||||| |||||||||||  || |||||| |||||| ||||||| | ||||||| ||||||||||||||  ||||||||||||    
T  50784189 gagtttggaggggagggaaaatgagtgctttgaggggtgaaaaatatga-gagaaattgaagaaatctttcaatttttttaaaaga 50784273  T

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Target: scaffold0245 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 4371 - 4312
Alignment:
Q  158 agggctttgggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    |||||||||||||| ||||| ||| || || ||| |||||||| |||||||||||||||||    
T  4371 agggctttgggggttgaaaa-atagagggatatggagaaatctatcacattttttaaaaga 4312  T

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Target: scaffold0229 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 4702 - 4643
Alignment:
Q  158 agggctttgggggtggaaaatataaagagaaatgaagaaatctttcacattttttaaaaga 218  Q
    |||||||||||||| ||||| ||| || || ||| |||||||| |||||||||||||||||    
T  4702 agggctttgggggttgaaaa-atagagggatatggagaaatctatcacattttttaaaaga 4643  T

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