View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_high_18 (Length: 261)
Name: NF4072_high_18
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 45701891 - 45702120
Alignment:
| Q |
1 |
catgttaaaaaatgggtccattgatgaacactcattttctcgttttttaattg-----cattgcatggactaataatcaagcgaatgtcacccacatgtt |
95 |
Q |
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| T |
45701891 |
catgttaaaaaatgggtccatctatgaacactcattttctcgttttttaattgcattgcattgcatggactaataatcaagcgaatgtcacccacatgtt |
45701990 |
T |
|
| Q |
96 |
atgatggatcgtgtgccagatggtttctttagtgaataaggacttaatttgatcctattattgtctattcaatttagtctctaaattattattctttcag |
195 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45701991 |
atgctggatcgtgtgccagatggtttctttagtgaataaggacttaatttgatcctattatt--------------gtctctaaattattattctttcag |
45702076 |
T |
|
| Q |
196 |
ttnnnnnnnntagtgataatttaaagaacaaattaactatttat |
239 |
Q |
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|| || ||||||||||||||||||||||||||||||| |
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| T |
45702077 |
ttaaaaaaaatattgataatttaaagaacaaattaactatttat |
45702120 |
T |
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