View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4072_high_19 (Length: 253)
Name: NF4072_high_19
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_high_19 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 4020215 - 4020467
Alignment:
| Q |
1 |
acattcacactcccacagagcattggatttgttaaaaaccattatttaaatacaaaaatataaaatagttaaaccattgcatggcaggggaaacgttgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4020215 |
acattcacactcccacagagcattggatttgttaaaaaccattatttaaatacaaaaatataaaatagttaaaccattgcatggcaggggaaactttgac |
4020314 |
T |
|
| Q |
101 |
tttccaaacagtttacatgctgaaaatatctgtatgaaccatgttgcatgcactttcctttaaatttaaatatattaaaatattaataacttcnnnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4020315 |
tttccaaacagtttacatgctgaaaatatctgtatgaaccatgttgcatgcactttcctttaaatttaaatatattaaaatattaataacttcttttttt |
4020414 |
T |
|
| Q |
201 |
aataatggtgggtggatgagtttgattcctctctttaaattctccctcagttt |
253 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4020415 |
aataatggtgggtgaataagtttgattcctctctttaaattctccctcagttt |
4020467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 56 - 249
Target Start/End: Complemental strand, 3961045 - 3960848
Alignment:
| Q |
56 |
aaatataaaatagttaaaccattgcatggc-aggggaaacgttgactttccaaacagtttacatgctgaaaatatctgtatgaaccatgttgcatgcact |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| |||| |||| |||||||||| || | |||||| |
|
|
| T |
3961045 |
aaatataaaatagttaaaccattgcatggctaggggaaacgttgacttgccaaacagtatacatgttgaagttatccgtatgaaccaagtgacttgcact |
3960946 |
T |
|
| Q |
155 |
ttcctttaaatttaaatatattaaaatattaataactt--cnnnnnnnaataatggtgggtggatgagtttgattcctctc-tttaaattctccctca |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | |||||||||| || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
3960945 |
ttcctttaaatttaaatatattaaaatatttgtaactttcctttctttaataatggtgattgaatgagtttgattcctctcttttaaattctccctca |
3960848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 4005668 - 4005811
Alignment:
| Q |
56 |
aaatataaaatagttaaaccattgcatggcaggggaaacgttgactttccaaacagtttac-------atgctgaaaatatctgtatgaaccatgttgca |
148 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||| ||| ||| | | |||||||||||| | || || |
|
|
| T |
4005668 |
aaatataaaatagttaaacaattgcaaggcagggggaacgttgacttgtcaaacagtatactgtatacatgtttggattatctgtatgaatgacgtgaca |
4005767 |
T |
|
| Q |
149 |
tgcactttcctttaaatttaaatatattaaaatattaataactt |
192 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4005768 |
tgcactttcctttaaatttaaatatgttaaaatattaataactt |
4005811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 4221379 - 4221423
Alignment:
| Q |
149 |
tgcactttcctttaaatttaaatatattaaaatattaataacttc |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4221379 |
tgcactttcctttaaatttaaatatattaaaatattaataacttc |
4221423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 184
Target Start/End: Original strand, 3822909 - 3822944
Alignment:
| Q |
149 |
tgcactttcctttaaatttaaatatattaaaatatt |
184 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3822909 |
tgcactttcctctaaatttaaatatattaaaatatt |
3822944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University