View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_high_21 (Length: 239)
Name: NF4072_high_21
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 29438739 - 29438528
Alignment:
| Q |
10 |
agcacagagagaaatggttgaaaagagaaagacagaattgttttgtaaaggaaaagagatgagagtcgaaagggatgatttgaggaatcaagttccaaga |
109 |
Q |
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| T |
29438739 |
agcacagagagaaatggttgaaaagagaaagacagaattgttttgtaaaggaaaagagatgagagtcgaaagggatgatttgaggaatcaagttccaaga |
29438640 |
T |
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| Q |
110 |
ttaaaagctgagaaggaattggcaaagataacacaagataatattgaagaagagtggtcaaagcttggagaacaattcattggaagcaccaattttgaag |
209 |
Q |
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| T |
29438639 |
ttaaaagctgagaaggaattggcaaagataacacaagataatattgaagaagagtggtcaaagcttggagaacaattcattggaagcaccaattttgaag |
29438540 |
T |
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| Q |
210 |
agtggagaacat |
221 |
Q |
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| T |
29438539 |
agtggagaacat |
29438528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 29634283 - 29634227
Alignment:
| Q |
139 |
aacacaagataatattgaagaagagtggtcaaagcttggagaacaattcattggaag |
195 |
Q |
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| T |
29634283 |
aacacgagataatattgaagctgagtggtccaagcttcgagaacaattcattcgaag |
29634227 |
T |
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