View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_high_24 (Length: 237)
Name: NF4072_high_24
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4020475 - 4020696
Alignment:
| Q |
1 |
tcttttctatctctttcttgactaaaaaatgttataatgtcacaattatatttcagttttctaataattttcctctcttcattcagagaaagatagagaa |
100 |
Q |
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| T |
4020475 |
tcttttctatctctttcttgactaaaaaatgttataatgtcacaattatatttcagttttctaataattttcctctcttcattcagagaaagatagagaa |
4020574 |
T |
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| Q |
101 |
gatcaaaagagggtttgattgagaggatctaaattatttggttggatttattgaatagggataatctgcactaagtggctaacccgcaaatccctcttct |
200 |
Q |
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| T |
4020575 |
gatcaaaagagggtttgattgagaggatctaaattatttggttggatttagtgaatagggataatctgcactaagtggctaacccgcaaatccctcttct |
4020674 |
T |
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| Q |
201 |
ccgtgtatagtgagtgtgaatt |
222 |
Q |
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|||||| ||||||||||||||| |
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| T |
4020675 |
ccgtgtttagtgagtgtgaatt |
4020696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 179
Target Start/End: Complemental strand, 3960787 - 3960666
Alignment:
| Q |
51 |
tttcagttttctaataattttcctctcttcattcagagaaagatagagaagatcaaaagagggtttgattgagaggatctaaattatttggttggattta |
150 |
Q |
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||||||||||||||| ||||| |||||||||| |||||||||| | |||||||||||||| ||||||||||||||||| | ||| |||||||||| |
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| T |
3960787 |
tttcagttttctaatcatttt--tctcttcattaagagaaagatggggaagatcaaaagagagtttgattgagaggatc-----tcttttgttggattta |
3960695 |
T |
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| Q |
151 |
ttgaatagggataatctgcactaagtggc |
179 |
Q |
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|||||||| ||||||| |||||||||| |
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| T |
3960694 |
gcgaatagggctaatctgaactaagtggc |
3960666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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