View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_high_26 (Length: 221)
Name: NF4072_high_26
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_high_26 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 232476 - 232671
Alignment:
| Q |
18 |
atacttaatgtccacactatgtagcacctaatttgatgccattgttgatttctgcaaactagcgacaattgtgattatccatcagatctnnnnnnnnttg |
117 |
Q |
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| T |
232476 |
atactaaatgtccacactatgtagcacctaatttgatgccattgttgatttatgcagactagcgacaattgtggttatccatctgatctagaaatttttg |
232575 |
T |
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| Q |
118 |
ttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactgatgatgtc |
213 |
Q |
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| T |
232576 |
ttggaaagaaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactaatgatgtc |
232671 |
T |
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Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 14584899 - 14584704
Alignment:
| Q |
18 |
atacttaatgtccacactatgtagcacctaatttgatgccattgttgatttctgcaaactagcgacaattgtgattatccatcagatctnnnnnnnnttg |
117 |
Q |
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| T |
14584899 |
atactaaatgtccacactatgtagcacctaatttgatgccattgttgatttatgcagactagcgacaattgtggttatccatctgatctagaaatttttg |
14584800 |
T |
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| Q |
118 |
ttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactgatgatgtc |
213 |
Q |
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| T |
14584799 |
ttggaaagaaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactaatgatgtc |
14584704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 49825356 - 49825263
Alignment:
| Q |
115 |
ttgttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactgatga |
209 |
Q |
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|||||||||| |||||| | ||||||||||||||||||||||||||||| ||||| | ||||||||| ||| ||||||||||||| ||||||| |
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| T |
49825356 |
ttgttggaaaacaaatgctatttaaggttgaaattacggatgggaacttaatgcata-attggcgcaactatgctgtcaaaaggacatctgatga |
49825263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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