View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_high_5 (Length: 495)
Name: NF4072_high_5
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 5024409 - 5024877
Alignment:
| Q |
18 |
gttttctccattgatgactcgaggaacttttgaggattgcatcaattttgaagttctcatcctattacttctatccactgaatgaaagggaggactaata |
117 |
Q |
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| T |
5024409 |
gttttctccattgatgactcgaggaacttttgaggattgcatcaattttgaagttctcatcctattacttctatccactgaatgaaagggaggactaata |
5024508 |
T |
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| Q |
118 |
ggatctttgacatgtttgattgctggactgccttttgttgcttgcctgccaagcttgacaactgacattccatcagtaggatcactgcggtaaaccttgt |
217 |
Q |
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| T |
5024509 |
ggatctttgacatgtttgattgctggactgccttttgttgcttgcctgccaagcttgacaactgacattccatcagtaggatcactgcggtaaaccttgt |
5024608 |
T |
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| Q |
218 |
tacttgatgatttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaattggagatttact |
317 |
Q |
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| T |
5024609 |
tacctgatgatttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaattggagatttact |
5024708 |
T |
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| Q |
318 |
accctgagttgaactcaacctctcagctgtgacagatgtcgggttcttctgccgtgttcttggactttgtacattcaagctttcaccgacactactatta |
417 |
Q |
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| T |
5024709 |
accctgagttgaactcaacctctcagctgtgacagatgtcgggttcttctgccgtgttcttggactttgtacattcaagctttcaccgacactactatta |
5024808 |
T |
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| Q |
418 |
ctcgtattgtcatacggagaatttgaagcctgatcacttgcagtatctaatgattctttgtatctgtgc |
486 |
Q |
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| T |
5024809 |
ctcgtattgtcatacggagaatttgaagtctgatcacttgcagtatctaatgattctttgtatctgtgc |
5024877 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 4559078 - 4559172
Alignment:
| Q |
226 |
gatttaccatgaattggcatttctggtgaagaagaattatttgtttttcttgcaacctttgttggtttcatgatgacaattggagatttactacc |
320 |
Q |
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|||||| || ||||||||| ||||| |||| || |||||| | |||||| | || |||||||||||| ||||||||||||| |||||||||| |
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| T |
4559078 |
gatttatcaggaattggcagttctgtagaaggaggattattggcttttctagtcacttttgttggtttcgtgatgacaattggtaatttactacc |
4559172 |
T |
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