View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_high_6 (Length: 449)
Name: NF4072_high_6
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 31537807 - 31537397
Alignment:
| Q |
19 |
ataagcgatcacgttagtgtcttacttctaattctaatctacaaactaatttattgtctttcaaatnnnnnnnnnnnnttgactttgaatatttttatta |
118 |
Q |
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| T |
31537807 |
ataagcgattacgttagtgtcttacttctaattctaatctacaaactaattcattgtctttcaaataaaaaaaaaa--ttgactttgaatatttttatta |
31537710 |
T |
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| Q |
119 |
tatttgaaattcatcaatattcaataacttatggcattatttaattaccttgttgcaactgttttttagtgaagaacacttcaaaacagaaagatgtcta |
218 |
Q |
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| T |
31537709 |
tatttgaaattcatcaatattcaataacttatggcattatttaattaccttgttgcaactgttttttagtgaagaacacttcaaaacagaaagatgtcta |
31537610 |
T |
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| Q |
219 |
accatgttttaaagttgcttagacgtttccatcagtgtttctgaca-nnnnnnnaaaataattaattgttaatttctaacattacaagttgtattagtgc |
317 |
Q |
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| T |
31537609 |
accatgttttaaagttgcttagacgtttccatcaatgtttttcacattttatttaaaataattagttgtcaatttctaacattacaagttgtattagtgc |
31537510 |
T |
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| Q |
318 |
atataattgtaaggtaagttcacttagatatacaaatggacaagttgcatggcaagctgtattgtgcatatataattccaacaaacttgtgctcaactgc |
417 |
Q |
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| T |
31537509 |
atataatttgaaggtaacttcaattagatatacaaatggacaagttgcatggcaagctgtattgtgcatatataattccaacaaacttgtgctcaactgc |
31537410 |
T |
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| Q |
418 |
aaaaggagcacag |
430 |
Q |
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| T |
31537409 |
aaaaggagcacag |
31537397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 329 - 429
Target Start/End: Complemental strand, 31532216 - 31532116
Alignment:
| Q |
329 |
aggtaagttcacttagatatacaaatggacaagttgcatggcaagctgtattgtgcatatataattccaacaaacttgtgctcaactgcaaaaggagcac |
428 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31532216 |
aggtaacttcacttaaatatacaaatggacaagttgcatggcaagctgtattgtgcatataaaattccaacaaacttgtgctcaactgcaaaaggagcac |
31532117 |
T |
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| Q |
429 |
a |
429 |
Q |
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| T |
31532116 |
a |
31532116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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