View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_low_1 (Length: 771)
Name: NF4072_low_1
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 700; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 19 - 761
Target Start/End: Complemental strand, 30707985 - 30707242
Alignment:
| Q |
19 |
atgtttcactttgttcaggggcatctttgatcaaaagcagaagtatgtaacttgtgaatgtgtgagtcacattcaagaataataaaacaaaaaa-tatgc |
117 |
Q |
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| T |
30707985 |
atgtttcactttgttcaggggcatctttgatcaaaagcagaagtatgtaacttgtgaatgtgtgagtcacattcaagaataataaaacaaaaaaatatgc |
30707886 |
T |
|
| Q |
118 |
ttcattgttgtcttttgtttttcgtgaattgcttcattattctgtttcttgttaactaaagatacccccacaatgggcccatgtggtggagatcaatata |
217 |
Q |
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| T |
30707885 |
ttcattgttgtcttttgtttttcatgaattgcttcattattctgtttcttgttaactaaagatacccccacaatgggcccatgtggtggagatcaatata |
30707786 |
T |
|
| Q |
218 |
atgttttttgactccccaaatcatgttttggccacagtcagcacactgcacagttttttcaaatataaataaacgaggttgtttggcatatgaacacttc |
317 |
Q |
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| T |
30707785 |
atgttttttgactccccaaatcaggttttggccacagtcagcacactgcacagttttttcaaatataaataaacgaggttgtttggcatatgaacacttg |
30707686 |
T |
|
| Q |
318 |
catgagatgataaacgatctctttcagtttaaccagaaatccttgattcaaattcagccatgcgaatacagtgttaaatttcttgagagagagtttcgcc |
417 |
Q |
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| T |
30707685 |
catgagatgataaacgatctctttcagtttaaccagaaatccttgattcaaattcagccatgcgaatacagtgttaaatttcttgagagagagtttcacc |
30707586 |
T |
|
| Q |
418 |
actcctcgcagtcccacccaactcgagggattagtcactgcaattgcgcgcaaaggatatccggttcacaacaacaaaacaaacacgttctctgtgtaag |
517 |
Q |
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| T |
30707585 |
actcctcgcagtcccacccaactcgagggattagtcactgcaattgtgcgcaaaggatatccggttcacaacaacaaaacaaacacgttctccgtgtaag |
30707486 |
T |
|
| Q |
518 |
agaactcacaaaaacaataatggagaaccaggagagcagtatgagaggctcaagatggtctctcaagggaactactgctctagttactggtggaactcgt |
617 |
Q |
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| T |
30707485 |
agaactcacaaaaacaacaatggagaaccaggagagcagtatgagaggctcaagatggtctctcaagggaactactgctctagttactggtggaactcgt |
30707386 |
T |
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| Q |
618 |
ggaatcggtcatgctgtggtggaggaactagctgagtttggtgccacagtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagt |
717 |
Q |
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| T |
30707385 |
ggaatcggtcatgctgtggtggaggaactagctgagtttggtgccacagtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagt |
30707286 |
T |
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| Q |
718 |
ggaaagagaagggtttttctgtctatggatcggtctgtgctgct |
761 |
Q |
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| T |
30707285 |
ggaaagagaagggtttttctgtctatggatcggtttgtgatgct |
30707242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 523 - 748
Target Start/End: Complemental strand, 30719846 - 30719621
Alignment:
| Q |
523 |
tcacaaaaacaataatggagaaccaggagagcagtatgagaggctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaat |
622 |
Q |
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|||||||||||| ||||| |||| |||||||||| ||| ||||||||||||| ||||||||| |||||||| || || || ||||| |||||||| |
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| T |
30719846 |
tcacaaaaacaagaatggcgaacgcagagagcagtagcagaagctcaagatggtccctcaagggattcactgctctcgtcaccggcggaacacgtggaat |
30719747 |
T |
|
| Q |
623 |
cggtcatgctgtggtggaggaactagctgagtttggtgccacagtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaa |
722 |
Q |
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||| |||||| | ||||| ||||| |||||||||||||||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||||| |
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| T |
30719746 |
cggacatgctatcgtggaagaactcgctgagtttggtgccacagtctacacttgttctaggaaccaagaggagctgaataaacgcttaaatgagtggaaa |
30719647 |
T |
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| Q |
723 |
gagaagggtttttctgtctatggatc |
748 |
Q |
| |
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||||| ||||||||||| |||||||| |
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| T |
30719646 |
gagaaaggtttttctgtttatggatc |
30719621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 565 - 748
Target Start/End: Complemental strand, 30702253 - 30702070
Alignment:
| Q |
565 |
gctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaatcggtcatgctgtggtggaggaactagctgagtttggtgccac |
664 |
Q |
| |
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||||||||||||| ||||||||| || ||||| || || || ||||||||||| |||||||||||| | || |||||||| |||||||||||||| | |
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| T |
30702253 |
gctcaagatggtccctcaagggattcacagctcttgtcaccggcggaactcgtgggatcggtcatgctatcgtagaggaacttgctgagtttggtgctat |
30702154 |
T |
|
| Q |
665 |
agtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaagagaagggtttttctgtctatggatc |
748 |
Q |
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| T |
30702153 |
agtgtacacttgttctaggaatgaagaagaattgaataaatgcttaaatgagtggaaggagaaaggtttttctgtttatggatc |
30702070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 619
Target Start/End: Original strand, 30796994 - 30797047
Alignment:
| Q |
566 |
ctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtgg |
619 |
Q |
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|||||||||||| ||||| |||| |||||||| || ||||||||||||||||| |
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| T |
30796994 |
ctcaagatggtccctcaaaggaaagactgctctcgtcactggtggaactcgtgg |
30797047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 496
Target Start/End: Complemental strand, 43621338 - 43621281
Alignment:
| Q |
439 |
ctcgagggattagtcactgcaattgcgcgcaaaggatatccggttcacaacaacaaaa |
496 |
Q |
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| T |
43621338 |
ctcgagggattagtctctgtagttgcgcgcagaggatacccgattcacaacaaaaaaa |
43621281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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