View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_low_10 (Length: 394)
Name: NF4072_low_10
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 41547267 - 41546917
Alignment:
| Q |
19 |
cttaacccatatgttcatctaccaatggtcatttacaatgtgaagtccatgtttgtttctctttttgatatgcctcgcaaaaacatttgatttaaatttc |
118 |
Q |
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| T |
41547267 |
cttaacccatatgttcatctaccaatggtcatttacaatgtgaagtccatgtttgtttctctttttgacatgcctcgcaaaaacatttgatttaaatttc |
41547168 |
T |
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| Q |
119 |
atatttagtaatcctctaactagattgaacttgtttaattttgatatcattttcacgtttgcatgctccaattatttgtgttatatccattgctcctagc |
218 |
Q |
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| T |
41547167 |
atatttagtaatcctctaactagattgaacttgtttaattttgatatcattttcacgtttgcatgctccaattatttgtgttatatccattgctcctagc |
41547068 |
T |
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| Q |
219 |
tcattgacgcaagacattttccttcttgcttttctatatcagattgtttgattttataaatatt-ttttccctttaaccagggaaaagtatagagccatc |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41547067 |
tcattgacacaagacattttccttcttgcttttctatatcagattgtttgattttataaatatttttttccctttaaccagggaaaagtatagagccatc |
41546968 |
T |
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| Q |
318 |
agactaacttatagcttgacattaactttgattaaagataatattataagg |
368 |
Q |
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||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
41546967 |
agactaactaatagcttgacattaactttgattaaagacaatattataagg |
41546917 |
T |
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