View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4072_low_16 (Length: 315)

Name: NF4072_low_16
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4072_low_16
NF4072_low_16
[»] scaffold0057 (1 HSPs)
scaffold0057 (18-298)||(41105-41384)
[»] chr4 (1 HSPs)
chr4 (27-135)||(25352429-25352537)
[»] chr3 (10 HSPs)
chr3 (26-96)||(34279567-34279637)
chr3 (30-96)||(7237770-7237836)
chr3 (23-96)||(37508248-37508321)
chr3 (233-277)||(5943685-5943729)
chr3 (235-298)||(14054778-14054841)
chr3 (235-298)||(14062507-14062570)
chr3 (235-286)||(16642635-16642686)
chr3 (234-273)||(17791236-17791275)
chr3 (234-273)||(19099676-19099715)
chr3 (53-97)||(51940774-51940818)
[»] chr5 (5 HSPs)
chr5 (29-96)||(8726164-8726231)
chr5 (29-96)||(31698289-31698356)
chr5 (29-96)||(42838134-42838201)
chr5 (235-298)||(13936039-13936102)
chr5 (236-287)||(17458275-17458326)
[»] chr6 (4 HSPs)
chr6 (234-298)||(9191366-9191430)
chr6 (29-96)||(22501886-22501953)
chr6 (235-286)||(14989101-14989152)
chr6 (235-283)||(8403526-8403574)
[»] chr7 (5 HSPs)
chr7 (235-286)||(15867004-15867055)
chr7 (29-96)||(24768355-24768422)
chr7 (23-96)||(36962953-36963026)
chr7 (234-287)||(37945547-37945600)
chr7 (235-286)||(16060850-16060902)
[»] chr2 (3 HSPs)
chr2 (23-96)||(16767907-16767980)
chr2 (234-286)||(32251916-32251968)
chr2 (234-282)||(44586183-44586231)
[»] scaffold0091 (1 HSPs)
scaffold0091 (235-286)||(29396-29447)
[»] chr8 (1 HSPs)
chr8 (235-286)||(23658872-23658923)
[»] chr1 (2 HSPs)
chr1 (235-286)||(13881983-13882034)
chr1 (235-298)||(51626720-51626783)
[»] scaffold0003 (1 HSPs)
scaffold0003 (235-285)||(131121-131171)
[»] scaffold1269 (1 HSPs)
scaffold1269 (235-298)||(304-365)
[»] scaffold0737 (1 HSPs)
scaffold0737 (234-298)||(3393-3457)
[»] scaffold0319 (1 HSPs)
scaffold0319 (235-279)||(13296-13340)


Alignment Details
Target: scaffold0057 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 41384 - 41105
Alignment:
Q  18 gacatggacatgtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgtgcaggaaaggtgcaagaaaaa 117  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| || || ||||||||||||||    
T  41384 gacatggacatgtgaaa-ctcatttttacccctgactttttaacaatattacataactgccatccacatgggcatgtgtacaagagaggtgcaagaaaaa 41286  T
Q  118 gggtatccatgaaacattgttctttatttactacaacaatgaattatttaagggttaataggtgtttagcactgttatttgggcatattttaatttatct 217  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41285 gggtatccatgaaacattgttctttatttactacaaaactgaattatttaagggttaataggtgtttagcactgttatttgggcgtattttaatttatct 41186  T
Q  218 ccctataaataatagttgaaagagttaataacaatggtgaggaagaacttagttatatagagaggagacgatgtatgtaat 298  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41185 acctataaataatagttgaaagagttaataacaatggtgaggaagaacttagttatatagagaggagacgttgtatgtaat 41105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 25352429 - 25352537
Alignment:
Q  27 atgtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgtgcaggaaaggtgcaagaaaaagggtatcca 126  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||| || || |||| ||||||||||||| | ||    
T  25352429 atgtgaaatctcatttttacccctgattttttaacaatattacaaaactaccatccacatagacatgtgtacaagagaggtacaagaaaaagggtgtaca 25352528  T
Q  127 tgaaacatt 135  Q
    | |||||||    
T  25352529 tcaaacatt 25352537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 34279567 - 34279637
Alignment:
Q  26 catgtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgt 96  Q
    ||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  34279567 catgtgaaatctcatttttacccttaactttttaacaatactacaaaattgccatccacatgggcatgtgt 34279637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 7237770 - 7237836
Alignment:
Q  30 tgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgt 96  Q
    |||||||||| ||||||||||   |||||||||| |||||||| |||||||||||||||||| ||||    
T  7237770 tgaaatctcaattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgt 7237836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 37508248 - 37508321
Alignment:
Q  23 ggacatgtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgt 96  Q
    ||||||||||||||||| |||| |||||   | || ||| | ||||||||||||||||||||||||||| ||||    
T  37508248 ggacatgtgaaatctcaattttgcccctgcatgttcaacgaaattacaaaactgccatccacatgggcaggtgt 37508321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 5943685 - 5943729
Alignment:
Q  233 ttgaaagagttaataacaatggtgaggaagaacttagttatatag 277  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||    
T  5943685 ttgaaagagttaatgacaatggtgaggaagaaccaagttatatag 5943729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 14054778 - 14054841
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagacgatgtatgtaat 298  Q
    |||||||||||||||||| |||||||| ||| ||| |||||||||| || ||  ||||||||||    
T  14054778 gaaagagttaataacaattgtgaggaaaaacctaggtatatagagatgatactttgtatgtaat 14054841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 14062507 - 14062570
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagacgatgtatgtaat 298  Q
    |||||| ||||||||||| |||||||| ||| ||| || |||||||||||||  ||||||||||    
T  14062507 gaaagaattaataacaattgtgaggaaaaacctaggtagatagagaggagactttgtatgtaat 14062570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 16642686 - 16642635
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagac 286  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||| ||||||    
T  16642686 gaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagac 16642635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 17791275 - 17791236
Alignment:
Q  234 tgaaagagttaataacaatggtgaggaagaacttagttat 273  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  17791275 tgaaagagttaatgacaatggtgaggaagaacctagttat 17791236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 19099715 - 19099676
Alignment:
Q  234 tgaaagagttaataacaatggtgaggaagaacttagttat 273  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  19099715 tgaaagagttaatgacaatggtgaggaagaacctagttat 19099676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 51940818 - 51940774
Alignment:
Q  53 ttttttaacaatattacaaaactgccatccacatgggcatgtgtg 97  Q
    |||||| ||||  |||||||||||||||||||||||||| |||||    
T  51940818 ttttttgacaaatttacaaaactgccatccacatgggcaagtgtg 51940774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 8726164 - 8726231
Alignment:
Q  29 gtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgt 96  Q
    |||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  8726164 gtgaaatctcatttttacccttaactttttaacaatactacaaaattgccatccacatgggcatgtgt 8726231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 31698356 - 31698289
Alignment:
Q  29 gtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgt 96  Q
    |||||||||||||||||||| ||| |||||||||| | ||||||| ||||||||||||||||||||||    
T  31698356 gtgaaatctcatttttacccttaactttttaacaacactacaaaattgccatccacatgggcatgtgt 31698289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 42838201 - 42838134
Alignment:
Q  29 gtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgt 96  Q
    ||||||||||| ||||||||||   |||||||||| |||||||| |||||||||||||||||| ||||    
T  42838201 gtgaaatctcaattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgt 42838134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 13936102 - 13936039
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagacgatgtatgtaat 298  Q
    |||||||||||| || |||||| |||||||| ||||| |||||| |||||||| | ||||||||    
T  13936102 gaaagagttaatgacgatggtggggaagaacctagttgtatagaaaggagacgttatatgtaat 13936039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 17458326 - 17458275
Alignment:
Q  236 aaagagttaataacaatggtgaggaagaacttagttatatagagaggagacg 287  Q
    ||||||||||| || ||||||||| ||||| ||||| |||||||||||||||    
T  17458326 aaagagttaatgacgatggtgagggagaacctagttgtatagagaggagacg 17458275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 9191430 - 9191366
Alignment:
Q  234 tgaaagagttaataacaatggtgaggaagaacttagttatatagagaggagacgatgtatgtaat 298  Q
    ||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  9191430 tgaaagagttaatgacaatggtgaggaagaacctagttatataaagaggagacgttgtatgtaat 9191366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 22501953 - 22501886
Alignment:
Q  29 gtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgt 96  Q
    ||||||||||| ||||||||||   |||||||||| |||||||| |||||||||||||||||| ||||    
T  22501953 gtgaaatctcaattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgt 22501886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 14989101 - 14989152
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagac 286  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||| ||||||    
T  14989101 gaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagac 14989152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 8403526 - 8403574
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagagga 283  Q
    |||||||||||| || |||||| |||||||| ||||| |||||||||||    
T  8403526 gaaagagttaatgacgatggtggggaagaacctagttgtatagagagga 8403574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 15867004 - 15867055
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagac 286  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||||||||||    
T  15867004 gaaagagttaataacaattgtgaggaaaaacctaggtatatagagaggagac 15867055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 24768422 - 24768355
Alignment:
Q  29 gtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgt 96  Q
    ||||||||||| ||||||| ||   |||||||||| |||||||| |||||||||||||||||| ||||    
T  24768422 gtgaaatctcaattttacctcttcctttttaacaaaattacaaagctgccatccacatgggcaggtgt 24768355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 36962953 - 36963026
Alignment:
Q  23 ggacatgtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgt 96  Q
    ||||||||||||||||| |||| |||||   | |||||| | |||||||||||| |||||||||||||| ||||    
T  36962953 ggacatgtgaaatctcaattttgcccctgcctgtttaacgaaattacaaaactgtcatccacatgggcaggtgt 36963026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 37945547 - 37945600
Alignment:
Q  234 tgaaagagttaataacaatggtgaggaagaacttagttatatagagaggagacg 287  Q
    ||||||||||||| |  ||||||||||||||| ||||| ||||| |||||||||    
T  37945547 tgaaagagttaatgatgatggtgaggaagaacctagttgtatagggaggagacg 37945600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 16060902 - 16060850
Alignment:
Q  235 gaaagagttaataacaatggtgagg-aagaacttagttatatagagaggagac 286  Q
    ||||||||||||||||||||||||| || ||| ||| ||||||||| ||||||    
T  16060902 gaaagagttaataacaatggtgaggaaaaaacctagatatatagagcggagac 16060850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 16767980 - 16767907
Alignment:
Q  23 ggacatgtgaaatctcatttttacccctaattttttaacaatattacaaaactgccatccacatgggcatgtgt 96  Q
    ||||||||||| ||||| |||| |||||   | |||||| | ||||||||||||||||||||||||||| ||||    
T  16767980 ggacatgtgaagtctcaattttgcccctgcctatttaacgaaattacaaaactgccatccacatgggcaggtgt 16767907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 32251916 - 32251968
Alignment:
Q  234 tgaaagagttaataacaatggtgaggaagaacttagttatatagagaggagac 286  Q
    ||||||||||||| | ||| |||||||||||  ||||||||||||||||||||    
T  32251916 tgaaagagttaatgataatagtgaggaagaatctagttatatagagaggagac 32251968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 44586183 - 44586231
Alignment:
Q  234 tgaaagagttaataacaatggtgaggaagaacttagttatatagagagg 282  Q
    |||||||||||||  ||||||||||||||||| ||||||| ||| ||||    
T  44586183 tgaaagagttaatggcaatggtgaggaagaacctagttatgtagggagg 44586231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 29447 - 29396
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagac 286  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||| ||||||    
T  29447 gaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagac 29396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 23658923 - 23658872
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagac 286  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||| ||||||    
T  23658923 gaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagac 23658872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 13881983 - 13882034
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagac 286  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||| ||||||    
T  13881983 gaaagagttaataacaattgtgaggaaaaacctagatatatagagcggagac 13882034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 51626720 - 51626783
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagacgatgtatgtaat 298  Q
    ||||||||| |||| ||| |||||||| ||| ||| ||||||||||||||||  ||||||||||    
T  51626720 gaaagagttgataagaattgtgaggaaaaacctaggtatatagagaggagactttgtatgtaat 51626783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 131171 - 131121
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggaga 285  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||| |||||    
T  131171 gaaagagttaataacaattgtgaggaaaaacctagatatatagagcggaga 131121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 365 - 304
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagagaggagacgatgtatgtaat 298  Q
    ||||||||||||||||||  ||||||| |||  || ||||||||||||||||  ||||||||||    
T  365 gaaagagttaataacaat--tgaggaaaaaccaaggtatatagagaggagactttgtatgtaat 304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 3393 - 3457
Alignment:
Q  234 tgaaagagttaataacaatggtgaggaagaacttagttatatagagaggagacgatgtatgtaat 298  Q
    |||||||||||||   |||||||||||||||| ||||||| ||| |||| || | ||||||||||    
T  3393 tgaaagagttaatggaaatggtgaggaagaacctagttatgtagggaggggaagttgtatgtaat 3457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 13296 - 13340
Alignment:
Q  235 gaaagagttaataacaatggtgaggaagaacttagttatatagag 279  Q
    |||||||||||||||||| |||||||| ||| ||| |||||||||    
T  13296 gaaagagttaataacaattgtgaggaaaaacctagatatatagag 13340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University