View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_low_17 (Length: 315)
Name: NF4072_low_17
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_low_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 31538197 - 31537885
Alignment:
| Q |
1 |
ataatcatgaatatgatcaaattcatcttaggatagatatggattaaatttaagaatgggttttaattttgatctttatcattgaaactctcaactcatt |
100 |
Q |
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| T |
31538197 |
ataatcatgaatatggtcaaattcatcttaggatagatatggattaaatttaagaatgggttttaattttgatctttatcattgaaactctcaactcatt |
31538098 |
T |
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| Q |
101 |
gtttgcttgggttgtaatgtttttaggagttgttatatattttggttcgtgtattcttaggagtcattgacttgaattatcttgtaattctctttcatga |
200 |
Q |
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| T |
31538097 |
gtttgcttgggttgtaatgtttttaggagttgttatat--tttggttcgtgtatttttaggagtcattgacttgaattatcttgtaattctctttcatga |
31538000 |
T |
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| Q |
201 |
tacatcttatgctaagattgtttgtgtatactccattaaaaactataaacaaaattgatcaaataaaattgatatattttgtgctaaatttaaatcaaat |
300 |
Q |
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| T |
31537999 |
tacatcttatgctaagattgtttgtgtatactccattaaaaactataaacaaaattgatcaaataaaattgatatattttgtgctaaatttaaatcaaat |
31537900 |
T |
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| Q |
301 |
acatcaattttattt |
315 |
Q |
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| T |
31537899 |
acatcaattttattt |
31537885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 39858252 - 39858295
Alignment:
| Q |
180 |
tcttgtaattctctttcatgatacatcttatgctaagattgttt |
223 |
Q |
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| T |
39858252 |
tcttgtaattatctttcatgatacatcttgtgctatgattgttt |
39858295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 52861707 - 52861757
Alignment:
| Q |
265 |
aaaattgatatattttgtgctaaatttaaatcaaatacatcaattttattt |
315 |
Q |
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| T |
52861707 |
aaaattaatatatttagtccaaaatttgaatcaaatacatcaattttattt |
52861757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 10679781 - 10679725
Alignment:
| Q |
259 |
tcaaataaaattgatatattttgtgctaaatttaaatcaaatacatcaattttattt |
315 |
Q |
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| T |
10679781 |
tcaaagaaaattgatgtatttagacctaattttatatcaaatacatcaattttattt |
10679725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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