View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4072_low_19 (Length: 276)

Name: NF4072_low_19
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4072_low_19
NF4072_low_19
[»] chr1 (1 HSPs)
chr1 (18-271)||(37996892-37997145)
[»] chr6 (5 HSPs)
chr6 (26-229)||(7871845-7872048)
chr6 (24-107)||(7860647-7860730)
chr6 (38-122)||(7814702-7814786)
chr6 (136-237)||(3255302-3255403)
chr6 (53-117)||(3255225-3255289)
[»] chr4 (2 HSPs)
chr4 (18-97)||(14018390-14018469)
chr4 (136-236)||(14018251-14018351)
[»] chr3 (1 HSPs)
chr3 (143-240)||(43684888-43684985)
[»] chr5 (2 HSPs)
chr5 (74-117)||(32429778-32429821)
chr5 (67-108)||(23940493-23940534)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 37996892 - 37997145
Alignment:
Q  18 tctaccacaccatcccagcaatgaaatgagtgatgacaaaacacaagatcaatatgaattaagtttggaaacactggaatgactttgaaagaagcctctt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37996892 tctaccacaccatcccaacaatgaaatgagtgatgacaaaacacaagatcaatatgaattaagtttggaaacactggaatgactttgaaagaagcctctt 37996991  T
Q  118 gatttctggattcagtggttatacgtagaaattcaacattattaataccattaaatagaacatccattgaactgattctcgctctaatcaatttagacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37996992 gatttctggattcagtggttatacgtagaaattcaacattattaataccattaaatagaacatccattgaactgattctcgctctaatcaatttagacaa 37997091  T
Q  218 ggtcaaagatttcaacccttttggtgcatcgtattcatcatgattcatctcact 271  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37997092 ggtcaaggatttcaacccttttggtgcatcgtattcatcatgattcatctcact 37997145  T

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Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 7872048 - 7871845
Alignment:
Q  26 accatcccagcaatgaaatgagtgatgacaaaacacaagatcaatatgaattaagtttggaaacactggaatgactttgaaagaagcctcttgatttctg 125  Q
    ||||||||| |||||||| |||  || ||||||||| || ||||||||| ||||||||||||||| ||||||| || ||||||  || ||||||| | ||    
T  7872048 accatcccaacaatgaaacgagctattacaaaacactagttcaatatgatttaagtttggaaacagtggaatggctatgaaagttgcttcttgatctttg 7871949  T
Q  126 gattcagtggttatacgtagaaattcaacattattaataccattaaatagaacatccattgaactgattctcgctctaatcaatttagacaaggtcaaag 225  Q
     || |  ||||||| ||||  || |||||||||| |||||||||||| | | ||||||||||||| || |||||||||| ||| |||||||| |||||||    
T  7871948 aatcctttggttatgcgtaagaactcaacattatcaataccattaaacaaagcatccattgaactaatactcgctctaaccaacttagacaatgtcaaag 7871849  T
Q  226 attt 229  Q
    ||||    
T  7871848 attt 7871845  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 7860730 - 7860647
Alignment:
Q  24 acaccatcccagcaatgaaatgagtgatgacaaaacacaagatcaatatgaattaagtttggaaacactggaatgactttgaaa 107  Q
    ||||||||||| ||||||| |||| || |||||||||| || || ||||||| |||||||||||||| ||||||||||||||||    
T  7860730 acaccatcccaacaatgaagtgagcgacgacaaaacactagttctatatgaactaagtttggaaacagtggaatgactttgaaa 7860647  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 7814786 - 7814702
Alignment:
Q  38 atgaaatgagtgatgacaaaacacaagatcaatatgaattaagtttggaaacactggaatgactttgaaagaagcctcttgattt 122  Q
    ||||||||||| | || ||||||  || ||||||||||||||||||| ||||||| ||||||||| || |||| ||| |||||||    
T  7814786 atgaaatgagtaaggagaaaacaacaggtcaatatgaattaagtttgaaaacacttgaatgacttggatagaatccttttgattt 7814702  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 3255302 - 3255403
Alignment:
Q  136 ttatacgtagaaattcaacattattaataccattaaatagaacatccattgaactgattctcgctctaatcaatttagacaaggtcaaagatttcaaccc 235  Q
    |||| |||||||| || ||||||| ||||||||||||  || |||||| |  ||| || || ||||||| |||||||| ||||| ||| ||||| |||||    
T  3255302 ttatgcgtagaaactcgacattatcaataccattaaactgagcatccacttcactaatactggctctaaccaatttaggcaaggccaaggatttaaaccc 3255401  T
Q  236 tt 237  Q
    ||    
T  3255402 tt 3255403  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 3255225 - 3255289
Alignment:
Q  53 acaaaacacaagatcaatatgaattaagtttggaaacactggaatgactttgaaagaagcctctt 117  Q
    ||||||||| || ||| ||||||||||||||| |||||   ||||||| |||||||| |||||||    
T  3255225 acaaaacactagttcagtatgaattaagtttgaaaacatcagaatgacattgaaagaggcctctt 3255289  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 14018469 - 14018390
Alignment:
Q  18 tctaccacaccatcccagcaatgaaatgagtgatgacaaaacacaagatcaatatgaattaagtttggaaacactggaat 97  Q
    ||||| |||||||||||  |||||| ||||||||  |||||||| || |||||||||| |||||||| ||||||||||||    
T  14018469 tctacaacaccatcccaagaatgaattgagtgataccaaaacactagttcaatatgaactaagtttgaaaacactggaat 14018390  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 14018351 - 14018251
Alignment:
Q  136 ttatacgtagaaattcaacattattaataccattaaatagaacatccattgaactgattctcgctctaatcaatttagacaaggtcaaagatttcaaccc 235  Q
    |||| ||||||||||| ||||||| ||||||||||||  || ||||| |||||  ||| || ||||  | |||||||| ||| ||||| ||||| |||||    
T  14018351 ttatccgtagaaattcgacattatcaataccattaaaatgagcatcctttgaatcgatacttgctcggaccaatttagccaatgtcaaggatttaaaccc 14018252  T
Q  236 t 236  Q
    |    
T  14018251 t 14018251  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 43684888 - 43684985
Alignment:
Q  143 tagaaattcaacattattaataccattaaatagaacatccattgaactgattctcgctctaatcaatttagacaaggtcaaagatttcaacccttttg 240  Q
    |||||| |||||||||| |||  || ||||| ||||||| ||||||||||| || ||||||| ||| |||||||||| ||| ||||| ||| ||||||    
T  43684888 tagaaactcaacattataaatcgcagtaaatggaacatcgattgaactgatactggctctaaccaacttagacaaggacaaggatttaaactcttttg 43684985  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 32429778 - 32429821
Alignment:
Q  74 aattaagtttggaaacactggaatgactttgaaagaagcctctt 117  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||    
T  32429778 aattaagttttgaaacaccggaatgtctttgaaagaagcctctt 32429821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 23940493 - 23940534
Alignment:
Q  67 caatatgaattaagtttggaaacactggaatgactttgaaag 108  Q
    ||||||||||||||||| ||||||| |||||| |||||||||    
T  23940493 caatatgaattaagttttgaaacacaggaatgcctttgaaag 23940534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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