View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_low_2 (Length: 593)
Name: NF4072_low_2
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 52242627 - 52242334
Alignment:
| Q |
12 |
cacagaggaaatcagacgttgattttaatgatgtgtttgggggaccgccgcggaggaggtcatcggtgagtggaggagaggaaggtgaaacgggttggtg |
111 |
Q |
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| T |
52242627 |
cacagaggaaatcagacgttgattttaatgatgtgtttgggggaccaccgcggaggaggtcatcggtgagtggaggagaggaaggtgaaacgggttggtg |
52242528 |
T |
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| Q |
112 |
tagttggcctcctccgcctgagagcgagaaaccggtgtttggtgaggatagtggagttaggaggagaagaaaaggaaaagatttctttgatgatatattt |
211 |
Q |
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| T |
52242527 |
tagttggcctcctccgcctgagagcgagaaaccagtgtttggtgaggatagtggagctaggaggagaagaaaaggaaaagatttttttgatgatatattt |
52242428 |
T |
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| Q |
212 |
ggaggagaagattcacagtctcaaactccaagtgggtgttcaacaccaaagagacgtgatggtgctgctttcagtcctgctcttcgaccacttg |
305 |
Q |
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| T |
52242427 |
ggaggagaagattcacagtctcaaactccaagtgggtgttcaacaccaaagagacgtgatggtgctgctttcagtcctgctcttcgaccacttg |
52242334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 440 - 575
Target Start/End: Complemental strand, 52242225 - 52242085
Alignment:
| Q |
440 |
gcctcaaacaaatttaaagacaattcatcatttcgccaacaagttcactttaaaaacatattttaaagggaacggtggtgtattttattctcattggatg |
539 |
Q |
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| T |
52242225 |
gcctcaaacaaatttaaagacaattcatcatttcgccaacaagttcactttaaaaccatattttaaagggaacggcggtgtattttattctcattggatg |
52242126 |
T |
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| Q |
540 |
tcaatgtaaaac-----tacattgacactacatgtctaatt |
575 |
Q |
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| T |
52242125 |
tcaatgtaaaactagtttacattgacagtacatgtctaatt |
52242085 |
T |
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