View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4072_low_20 (Length: 264)

Name: NF4072_low_20
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4072_low_20
NF4072_low_20
[»] chr6 (28 HSPs)
chr6 (15-249)||(28795619-28795853)
chr6 (15-249)||(28789595-28789835)
chr6 (20-135)||(27657548-27657663)
chr6 (42-127)||(25077281-25077366)
chr6 (23-135)||(26659209-26659321)
chr6 (23-135)||(26765180-26765292)
chr6 (82-134)||(26626440-26626492)
chr6 (82-134)||(26732417-26732469)
chr6 (82-133)||(31287883-31287934)
chr6 (190-238)||(27589869-27589917)
chr6 (190-238)||(27674293-27674341)
chr6 (190-238)||(27695326-27695374)
chr6 (24-67)||(26626376-26626419)
chr6 (24-67)||(26732353-26732396)
chr6 (88-135)||(26805824-26805871)
chr6 (183-249)||(31287981-31288050)
chr6 (194-236)||(25514246-25514288)
chr6 (194-236)||(25583088-25583130)
chr6 (183-249)||(26638807-26638873)
chr6 (183-249)||(26744773-26744839)
chr6 (33-75)||(31287816-31287858)
chr6 (23-64)||(26638644-26638685)
chr6 (23-64)||(26744610-26744651)
chr6 (88-129)||(27589957-27589998)
chr6 (177-249)||(26659357-26659429)
chr6 (177-249)||(26765328-26765400)
chr6 (190-238)||(27682319-27682367)
chr6 (217-249)||(28782429-28782461)
[»] scaffold0277 (2 HSPs)
scaffold0277 (15-249)||(10364-10604)
scaffold0277 (23-249)||(1404-1630)
[»] scaffold0419 (1 HSPs)
scaffold0419 (15-249)||(10745-10979)
[»] chr4 (7 HSPs)
chr4 (82-135)||(18686452-18686505)
chr4 (83-135)||(18696258-18696310)
chr4 (82-135)||(18681779-18681832)
chr4 (82-135)||(18720918-18720971)
chr4 (82-135)||(18726011-18726064)
chr4 (82-130)||(18676417-18676465)
chr4 (92-130)||(18728380-18728418)
[»] chr1 (1 HSPs)
chr1 (77-135)||(26139315-26139373)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 28795619 - 28795853
Alignment:
Q  15 tggagtcggaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatga 114  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  28795619 tggagtcggaacattcatttttgtttgatgtgaaattggaagaacagattaaacatttgaatctcatttctgaaatggacaaagcacttttaaaaaatga 28795718  T
Q  115 gtggatccatgtggagcttaattttataaatagtttttggaataaagggatccatgtgactgaaaaactaagcagtgcacaaatgggaatccacgcgagg 214  Q
    ||||||||||||||||||||||||| |||| | | |||||||||||  ||||  ||||||||||||| |||||||||| |||||||||||||||| ||||    
T  28795719 gtggatccatgtggagcttaattttgtaaagaatgtttggaataaatcgatctgtgtgactgaaaaattaagcagtgcgcaaatgggaatccacgtgagg 28795818  T
Q  215 aaggagaaaagcaacgcggaggagaatgtgatatt 249  Q
    ||||||||||||||||| |||||||||||||||||    
T  28795819 aaggagaaaagcaacgcagaggagaatgtgatatt 28795853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 28789595 - 28789835
Alignment:
Q  15 tggagtcggaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatga 114  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||| |||    
T  28789595 tggagtcagaacattcatttttgtttaatctgaaattggaagaagagattacacatttgagtcgcatgtctgaaatggacaaagcacttttaaaaactga 28789694  T
Q  115 gtggatccatgtggagcttaattttataaatagtttttggaataaagggat------ccatgtgactgaaaaactaagcagtgcacaaatgggaatccac 208  Q
     ||||||||||||||||||||||||||||| ||| |||||||||||  |||      || ||||||||||||| |||||||||| |||||||||||||||    
T  28789695 atggatccatgtggagcttaattttataaagagtgtttggaataaatcgatctgtgaccgtgtgactgaaaaattaagcagtgcgcaaatgggaatccac 28789794  T
Q  209 gcgaggaaggagaaaagcaacgcggaggagaatgtgatatt 249  Q
    | ||| ||||||||||||||||| |||||||||||||||||    
T  28789795 gtgagtaaggagaaaagcaacgcagaggagaatgtgatatt 28789835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 27657663 - 27657548
Alignment:
Q  20 tcggaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatgagtgga 119  Q
    |||| |||| |||||||||||||| |||||||| |||||||||||||| ||   | |||  |||||||||||||||||| |||||| |||||||| ||||    
T  27657663 tcggcacatgcatttttgtttgatatgaaattgaaagaacagattaaatgtgcaaatcttgtgtctgaaatggacaaagaacttttgaaaaatgaatgga 27657564  T
Q  120 tccatgtggagcttaa 135  Q
    ||||||||||||||||    
T  27657563 tccatgtggagcttaa 27657548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 25077281 - 25077366
Alignment:
Q  42 atctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtg 127  Q
    |||||||||||||||||| | ||||| | |  | ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25077281 atctgaaattggaagaacgggttaaatggtcaaatctcatgtctgaaatggacaaagcacttttaaaaaatgaatggatccatgtg 25077366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 26659209 - 26659321
Alignment:
Q  23 gaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatgagtggatcc 122  Q
    |||||| ||||||||||||||||||  |||||||||   | | ||| ||| |||| || ||||||||||||||| ||||||||||||||||| |||||||    
T  26659209 gaacatacatttttgtttgatctgactttggaagaaaccagtgaacatttcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatggatcc 26659308  T
Q  123 atgtggagcttaa 135  Q
    || | ||||||||    
T  26659309 atatcgagcttaa 26659321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 26765180 - 26765292
Alignment:
Q  23 gaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatgagtggatcc 122  Q
    |||||| ||||||||||||||||||  |||||||||   | | ||| ||| |||| || ||||||||||||||| ||||||||||||||||| |||||||    
T  26765180 gaacatacatttttgtttgatctgactttggaagaaaccagtgaacatttcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatggatcc 26765279  T
Q  123 atgtggagcttaa 135  Q
    || | ||||||||    
T  26765280 atatcgagcttaa 26765292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 26626440 - 26626492
Alignment:
Q  82 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagctta 134  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  26626440 gtctgaaatggacaaaacacttttaaaaaatgaatggatccatgtggagctta 26626492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 26732417 - 26732469
Alignment:
Q  82 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagctta 134  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  26732417 gtctgaaatggacaaaacacttttaaaaaatgaatggatccatgtggagctta 26732469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 31287883 - 31287934
Alignment:
Q  82 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagctt 133  Q
    ||||||||||||||||||||||||  ||||||| ||||||| ||||||||||    
T  31287883 gtctgaaatggacaaagcacttttggaaaatgaatggatccgtgtggagctt 31287934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 27589917 - 27589869
Alignment:
Q  190 tgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggag 238  Q
    |||||||||||||||||||| | |||| |||||||||||| ||||||||    
T  27589917 tgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggag 27589869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 27674341 - 27674293
Alignment:
Q  190 tgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggag 238  Q
    |||||||||||||||||||| | |||| |||||||||||| ||||||||    
T  27674341 tgcacaaatgggaatccacgtgtggaaagagaaaagcaacacggaggag 27674293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 27695374 - 27695326
Alignment:
Q  190 tgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggag 238  Q
    |||||||||||||||||||| | |||| |||||||||||| ||||||||    
T  27695374 tgcacaaatgggaatccacgtgtggaatgagaaaagcaacacggaggag 27695326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 26626376 - 26626419
Alignment:
Q  24 aacattcatttttgtttgatctgaaattggaagaacagattaaa 67  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||    
T  26626376 aacatgcatatttgtttgatctgaaattggaagaaaagattaaa 26626419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 26732353 - 26732396
Alignment:
Q  24 aacattcatttttgtttgatctgaaattggaagaacagattaaa 67  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||    
T  26732353 aacatgcatatttgtttgatctgaaattggaagaaaagattaaa 26732396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 26805824 - 26805871
Alignment:
Q  88 aatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 135  Q
    ||||||||||| |||||  |||||||| ||||||||||||||||||||    
T  26805824 aatggacaaagtactttcgaaaaatgaatggatccatgtggagcttaa 26805871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 31287981 - 31288050
Alignment:
Q  183 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgc---ggaggagaatgtgatatt 249  Q
    |||| |||||||||||||||||||||| |   |||||||||| ||||||   ||||||||||||||||||    
T  31287981 taaggagtgcacaaatgggaatccacgtgttaaaggagaaaaacaacgcagaggaggagaatgtgatatt 31288050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 25514246 - 25514288
Alignment:
Q  194 caaatgggaatccacgcgaggaaggagaaaagcaacgcggagg 236  Q
    |||||||||||||||| | ||||||||||||||||| ||||||    
T  25514246 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 25514288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 25583088 - 25583130
Alignment:
Q  194 caaatgggaatccacgcgaggaaggagaaaagcaacgcggagg 236  Q
    |||||||||||||||| | ||||||||||||||||| ||||||    
T  25583088 caaatgggaatccacgtgtggaaggagaaaagcaacacggagg 25583130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 26638807 - 26638873
Alignment:
Q  183 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatatt 249  Q
    |||| ||||||| ||||||||||||||     ||||||||||||||| |||||||| ||||||||||    
T  26638807 taaggagtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatatt 26638873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 26744773 - 26744839
Alignment:
Q  183 taagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatatt 249  Q
    |||| ||||||| ||||||||||||||     ||||||||||||||| |||||||| ||||||||||    
T  26744773 taaggagtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatatt 26744839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 31287816 - 31287858
Alignment:
Q  33 ttttgtttgatctgaaattggaagaacagattaaacgtttgag 75  Q
    |||||||||||||||||||||||||||| | |||||| |||||    
T  31287816 ttttgtttgatctgaaattggaagaacataataaacgcttgag 31287858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 26638644 - 26638685
Alignment:
Q  23 gaacattcatttttgtttgatctgaaattggaagaacagatt 64  Q
    |||||| |||||||||||||  ||||||||||||||||||||    
T  26638644 gaacatgcatttttgtttgacttgaaattggaagaacagatt 26638685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 26744610 - 26744651
Alignment:
Q  23 gaacattcatttttgtttgatctgaaattggaagaacagatt 64  Q
    |||||| |||||||||||||  ||||||||||||||||||||    
T  26744610 gaacatgcatttttgtttgacttgaaattggaagaacagatt 26744651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 27589998 - 27589957
Alignment:
Q  88 aatggacaaagcacttttaaaaaatgagtggatccatgtgga 129  Q
    ||||||||||| |||||| |||||||| ||||||||||||||    
T  27589998 aatggacaaaggacttttgaaaaatgaatggatccatgtgga 27589957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 26659357 - 26659429
Alignment:
Q  177 aaaaactaagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatatt 249  Q
    ||||| |||||||||| ||||| |||||||| | |  |||||||||||||||| |||| ||| || |||||||    
T  26659357 aaaaattaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatatt 26659429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 26765328 - 26765400
Alignment:
Q  177 aaaaactaagcagtgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggagaatgtgatatt 249  Q
    ||||| |||||||||| ||||| |||||||| | |  |||||||||||||||| |||| ||| || |||||||    
T  26765328 aaaaattaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatatt 26765400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 27682319 - 27682367
Alignment:
Q  190 tgcacaaatgggaatccacgcgaggaaggagaaaagcaacgcggaggag 238  Q
    |||||||| ||||||||||| | |||| |||||||||||| ||||||||    
T  27682319 tgcacaaaggggaatccacgtgtggaatgagaaaagcaacacggaggag 27682367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 28782429 - 28782461
Alignment:
Q  217 ggagaaaagcaacgcggaggagaatgtgatatt 249  Q
    ||||||||||||||| |||||||||||||||||    
T  28782429 ggagaaaagcaacgcagaggagaatgtgatatt 28782461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 10604 - 10364
Alignment:
Q  15 tggagtcggaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatga 114  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||| |||    
T  10604 tggagtcagaacattcatttttgtttaatctgaaattggaagaagagattacacatttgagtcgcatgtctgaaatggacaaagcacttttaaaaactga 10505  T
Q  115 gtggatccatgtggagcttaattttataaatagtttttggaataaagggat------ccatgtgactgaaaaactaagcagtgcacaaatgggaatccac 208  Q
     ||||||||||||||||||||||||||||| ||| |||||||||||  |||      || ||||||||||||| |||||||||| |||||||||||||||    
T  10504 atggatccatgtggagcttaattttataaagagtgtttggaataaatcgatctgtgaccgtgtgactgaaaaattaagcagtgcgcaaatgggaatccac 10405  T
Q  209 gcgaggaaggagaaaagcaacgcggaggagaatgtgatatt 249  Q
    | ||| ||||||||||||||||| |||||||||||||||||    
T  10404 gtgagtaaggagaaaagcaacgcagaggagaatgtgatatt 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 1630 - 1404
Alignment:
Q  23 gaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatgagtggatcc 122  Q
    |||||||||||||||||  ||||||||||| || ||||||||  || |||| ||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  1630 gaacattcatttttgttgaatctgaaattgaaacaacagatttcacttttgggtcgcatgtctgaaatggaaaaagcacttttaaaaaatgaatggatcc 1531  T
Q  123 atgtggagcttaattttataaatagtttttggaataaagggatccatgtgactgaaaaactaagcagtgcacaaatgggaatccacgcgaggaaggagaa 222  Q
    ||||||| ||||||||| |||| | | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  1530 atgtggaacttaattttgtaaagaatgtttggaataaagggatccaagtgattgaaaaactaagcagtgcacaaatgggaatccacgtgaggatggagaa 1431  T
Q  223 aagcaacgcggaggagaatgtgatatt 249  Q
    ||||||||| |||||||| ||||||||    
T  1430 aagcaacgcagaggagaacgtgatatt 1404  T

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Target: scaffold0419 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 10745 - 10979
Alignment:
Q  15 tggagtcggaacattcatttttgtttgatctgaaattggaagaacagattaaacgtttgagtctcatgtctgaaatggacaaagcacttttaaaaaatga 114  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||| || |||| ||| | |||||||||||||| ||||| |||||| ||||||    
T  10745 tggagtcagaacattcatttttgtttaatctgaaattggaagaagagattacacatttgtgtcgcctgtctgaaatggacgaagcaattttaagaaatga 10844  T
Q  115 gtggatccatgtggagcttaattttataaatagtttttggaataaagggatccatgtgactgaaaaactaagcagtgcacaaatgggaatccacgcgagg 214  Q
     |||||||||||||||||||||||| |||| | | |||||||||||  ||||||||||||||||||| |||||||||| ||||| |||||||||| ||||    
T  10845 atggatccatgtggagcttaattttgtaaagaatgtttggaataaatcgatccatgtgactgaaaaattaagcagtgcgcaaataggaatccacgtgagg 10944  T
Q  215 aaggagaaaagcaacgcggaggagaatgtgatatt 249  Q
    | ||||||||||||||| |||||||||||||||||    
T  10945 atggagaaaagcaacgcagaggagaatgtgatatt 10979  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 18686505 - 18686452
Alignment:
Q  82 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 135  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||| ||||    
T  18686505 gtctgaaatggacaaagcacttttaaaaaatgaatggatctatgtggagtttaa 18686452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 18696310 - 18696258
Alignment:
Q  83 tctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 135  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||| ||||    
T  18696310 tctgaaatggacaaagcacttttaaaaaatgaatggatcaatgtggagtttaa 18696258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 18681832 - 18681779
Alignment:
Q  82 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 135  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||| ||||    
T  18681832 gtctgaaatggacaaagcacttttaaaaaatgaacggatctatgtggagtttaa 18681779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 18720971 - 18720918
Alignment:
Q  82 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 135  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||| ||||    
T  18720971 gtctgaaatggacaaagcacatttaaaaaatgaatggatctatgtggagtttaa 18720918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 18726064 - 18726011
Alignment:
Q  82 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 135  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||| ||||    
T  18726064 gtctgaaatggacaaagcacttttaaaaaatgaacggatctatgtggagtttaa 18726011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 18676465 - 18676417
Alignment:
Q  82 gtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggag 130  Q
    ||||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  18676465 gtctgcaatggacaaagcacttttaaaaaatgaatggatctatgtggag 18676417  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 18728418 - 18728380
Alignment:
Q  92 gacaaagcacttttaaaaaatgagtggatccatgtggag 130  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  18728418 gacaaagcacttttaaaaaatgaatggatctatgtggag 18728380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 26139315 - 26139373
Alignment:
Q  77 ctcatgtctgaaatggacaaagcacttttaaaaaatgagtggatccatgtggagcttaa 135  Q
    ||||||||| || ||||  ||||||||||||||||||| ||||||||||| ||||||||    
T  26139315 ctcatgtctaaactggaggaagcacttttaaaaaatgaatggatccatgtagagcttaa 26139373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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