View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_low_22 (Length: 257)
Name: NF4072_low_22
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 69 - 244
Target Start/End: Complemental strand, 5737753 - 5737582
Alignment:
| Q |
69 |
agaattcaaataaactttcaaatatattcataatgatatatagtaatcaatttgatttgtagtnnnnnnnnnnnnnnnnnngttaatatagtgcacgtgg |
168 |
Q |
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| T |
5737753 |
agaattcaaataaactttcaaatatattcataatgatatatagtaatcaatttgatttgtagtaaaaaaaaatagaa----gttaatatagtgcacgtgg |
5737658 |
T |
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| Q |
169 |
ctttagttattataataataaatctttgggtccacagctacatgacatgcaaatttacctctttctcaatatgatg |
244 |
Q |
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| T |
5737657 |
ctttagttattataataataaatctttgggtccacagctacatgacatgcaaatttacctctttctcaatatgatg |
5737582 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 37047764 - 37047832
Alignment:
| Q |
163 |
acgtggctttagttattataataataaatctttgggtccacagctacatgacatgcaaatttacctcttt |
232 |
Q |
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| T |
37047764 |
acgtagctttagttattataataataaatc-tagggtccacacaaatgtgacgtgcaaatttacctcttt |
37047832 |
T |
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