View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_low_26 (Length: 239)
Name: NF4072_low_26
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 42007663 - 42007447
Alignment:
| Q |
10 |
catcatcatcaaataaagcacagtataatatcaaattcaaaactttcacatatttcatatatctcatttaaaatttgatgtcaagnnnnnnnncaatcat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42007663 |
catcatcatcaaataaagcacagtataatatcaaattcaaaactttcacatatttcatatatctcatttaaaatttgatgtcaagaaaaaaaacaatcat |
42007564 |
T |
|
| Q |
110 |
aatgaagcttaattatacattattaacaatgaacaaaaccataatcataaaccctaaaaggataataataaatcctaggtttaaaaatctaaacaatatt |
209 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42007563 |
aatgaagcttaattatacat-attaacaatgaacaaaaccataatcataaaccctaaaaggataataacaaatcctaggtttaaaaatctaaacaatatt |
42007465 |
T |
|
| Q |
210 |
gtatcactatcattagtg |
227 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
42007464 |
gtatcactatcattagtg |
42007447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 1243012 - 1242796
Alignment:
| Q |
10 |
catcatcatcaaataaagcacagtataatatcaaattcaaaactttcacatatttcatatatctcatttaaaatttgatgtcaagnnnnnnnncaatcat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
1243012 |
catcatcatcaaataaagcacagtataatatcaaattcaaaactttcacatatttcatatatctcatttaaaatttgatatcaagaaaaaaa-caatcat |
1242914 |
T |
|
| Q |
110 |
aatgaagcttaattatacattattaacaatgaacaaaaccataatcataaaccctaaaaggataataataaatcctaggtttaaaaatctaaacaatatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| |
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|
| T |
1242913 |
aatgaagcttaattatacattattaacaatgaacaaaaccataatcataaaccctaaaaggataataacaaatcctaggttttaaaatctaaacagtatt |
1242814 |
T |
|
| Q |
210 |
gtatcactatcattagtg |
227 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
1242813 |
ttatcactatcattagtg |
1242796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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