View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4072_low_27 (Length: 239)

Name: NF4072_low_27
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4072_low_27
NF4072_low_27
[»] chr1 (2 HSPs)
chr1 (1-223)||(37996455-37996677)
chr1 (1-97)||(28720045-28720141)
[»] chr6 (10 HSPs)
chr6 (1-220)||(7872270-7872489)
chr6 (2-89)||(3254883-3254970)
chr6 (1-187)||(7819862-7820048)
chr6 (2-87)||(14435594-14435679)
chr6 (1-88)||(7815434-7815521)
chr6 (1-75)||(7805772-7805846)
chr6 (30-90)||(14438250-14438310)
chr6 (6-88)||(7860954-7861036)
chr6 (5-87)||(10416486-10416568)
chr6 (151-192)||(3254771-3254812)
[»] scaffold1377 (1 HSPs)
scaffold1377 (2-90)||(1341-1429)
[»] chr4 (2 HSPs)
chr4 (1-89)||(14018688-14018776)
chr4 (100-192)||(14018796-14018888)
[»] scaffold1089 (1 HSPs)
scaffold1089 (2-97)||(610-705)
[»] chr3 (1 HSPs)
chr3 (2-96)||(2467516-2467610)
[»] chr5 (2 HSPs)
chr5 (27-88)||(14308586-14308647)
chr5 (15-87)||(31262474-31262546)
[»] chr7 (2 HSPs)
chr7 (28-66)||(8794149-8794187)
chr7 (135-192)||(19316476-19316533)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37996677 - 37996455
Alignment:
Q  1 tattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatcgaagttactgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37996677 tattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgagaatcgaagttactgca 37996578  T
Q  101 aatggaatacttttggaaaaaagtcggatcataaaagaactgtactcctatccaaggatatctacaacatgtaaactttcatttgaatttaaataatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37996577 aatggaatacttttggaaaaaagtcggatcataaaagaactgtactcctatccaaggatatctacaacatgtaaactttcatttgaatttaaataatgtt 37996478  T
Q  201 actaaaattatcaatgttattct 223  Q
    |||||||||||||||||||||||    
T  37996477 actaaaattatcaatgttattct 37996455  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28720141 - 28720045
Alignment:
Q  1 tattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatcgaagttact 97  Q
    ||||||||| |||||||||||||   ||||||| ||||||||||  |||||| |||| ||||| || ||||||||||| |||||||| || ||||||    
T  28720141 tattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagacttttacaagaaatgacaattgaggttact 28720045  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 7872270 - 7872489
Alignment:
Q  1 tattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatcgaagttactgca 100  Q
    ||||||||||||  | ||||| ||  |||||||||||||||||| |||||||||||| |||||| |||||||| ||||||||| |||||  |||||| |     
T  7872270 tattttaaacttccatggctcagcaaatgatcttcgatttgcaacatatattttgcagaatgcaggtcttttagaagacatgaaaatcggcgttactact 7872369  T
Q  101 aatggaatacttttggaaaaaagtcggatcataaaagaactgtactcctatccaaggatatctacaacatgtaaactttcatttgaatttaaataatgtt 200  Q
    ||  |||| | | |||  ||||||| ||| | | ||||| | | ||| | ||||| ||||||| ||| |||||||||||||||| ||||||| || ||||    
T  7872370 aaccgaatgcatctggggaaaagtcagattaaagaagaattatcctcttgtccaacgatatcttcaagatgtaaactttcatttaaatttaagtattgtt 7872469  T
Q  201 actaaaattatcaatgttat 220  Q
    |||| | |||||| ||||||    
T  7872470 actagatttatcagtgttat 7872489  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 3254970 - 3254883
Alignment:
Q  2 attttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatcg 89  Q
    ||||||||| |||| | ||||||  ||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||||| |||||    
T  3254970 attttaaaccttgatgcctcggcaaatgatcttcaatttgcaaaatatattttgcagaatgcgagtcttttacaagacatgagaatcg 3254883  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 7820048 - 7819862
Alignment:
Q  1 tattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatcgaagttactgca 100  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||| ||||  | |||||   |||||||||||| |||||||| |   ||| | |     
T  7820048 tattttaaactttgaaggctcggaaaatgatcttcgatttgcaaaatatgttttaaagaatgcgtatcttttacaagaaatgacaattggttttagtact 7819949  T
Q  101 aatggaatacttttggaaaaaagtcggatcataaaagaactgtactcctatccaaggatatctacaacatgtaaactttcatttgaa 187  Q
     |  ||||  ||||||||||||||   || ||| ||||| ||| |||||||||||||||||||  |  |||||||||||||||||||    
T  7819948 gaaagaatggttttggaaaaaagtgcaattatagaagaattgtcctcctatccaaggatatctcaaggatgtaaactttcatttgaa 7819862  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 14435679 - 14435594
Alignment:
Q  2 attttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaat 87  Q
    ||||||||||||||||| |||||  |||| |||| |||||||| |||||| ||||| ||||| || ||||||||||| ||||||||    
T  14435679 attttaaactttgaaggatcggcaaatgaccttcaatttgcaaaatatatattgcagaatgcgaggcttttacaagatatgacaat 14435594  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 7815434 - 7815521
Alignment:
Q  1 tattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatc 88  Q
    ||||||||||||  |||||||||   |||||||||||||| ||| |||||||||||| ||||| ||||| || || ||||||| ||||    
T  7815434 tattttaaacttacaaggctcggaaaatgatcttcgatttacaaaatatattttgcagaatgcgagtctcttgcaggacatgaaaatc 7815521  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7805846 - 7805772
Alignment:
Q  1 tattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttaca 75  Q
    ||||||||||||||| |||||||   |||||||||||||||||| |||||||||  | ||||  |||||||||||    
T  7805846 tattttaaactttgacggctcggataatgatcttcgatttgcaaaatatattttaaagaatgggagtcttttaca 7805772  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 14438310 - 14438250
Alignment:
Q  30 atcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatcga 90  Q
    ||||| ||||||||  |||||||||||| ||||| || ||||||||||| |||||||||||    
T  14438310 atcttagatttgcatcatatattttgcagaatgcgaggcttttacaagatatgacaatcga 14438250  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 7860954 - 7861036
Alignment:
Q  6 taaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatc 88  Q
    |||||||| |||||||| |  ||||||||  ||||| || |||||||||||| ||||||| ||| |||| |||||||| ||||    
T  7860954 taaactttcaaggctcgacaaatgatcttaaatttgtaaaatatattttgcagaatgcaactctcttacgagacatgaaaatc 7861036  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 10416486 - 10416568
Alignment:
Q  5 ttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaat 87  Q
    |||||||| || |||||||   ||||||||| |||||||| ||||||||| || ||  |  ||||||||||||||||||||||    
T  10416486 ttaaacttcgatggctcggaaaatgatcttcaatttgcaaaatatattttacagaaatcgggtcttttacaagacatgacaat 10416568  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 3254812 - 3254771
Alignment:
Q  151 tccaaggatatctacaacatgtaaactttcatttgaatttaa 192  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||    
T  3254812 tccaaggatatctccaaaatgtaaaatttcatttgaatttaa 3254771  T

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Target: scaffold1377 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 1429 - 1341
Alignment:
Q  2 attttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatcga 90  Q
    |||||||||||||||||||||||  || ||||||||||||||| |||||||||||| ||||| || ||||||||||| |||||||||||    
T  1429 attttaaactttgaaggctcggccaataatcttcgatttgcaacatatattttgcagaatgcgaggcttttacaagatatgacaatcga 1341  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 14018688 - 14018776
Alignment:
Q  1 tattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatcg 89  Q
    |||||||||||||||   ||||||  |||||||||||||||||| ||| |||||||| |||||  || ||||||||||||||| |||||    
T  14018688 tattttaaactttgataactcggcaaatgatcttcgatttgcaaaatacattttgcagaatgcccgtattttacaagacatgaaaatcg 14018776  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 14018796 - 14018888
Alignment:
Q  100 aaatggaatacttttggaaaaaagtcggatcataaaagaactgtactcctatccaaggatatctacaacatgtaaactttcatttgaatttaa 192  Q
    ||||| |||||||||||||||| ||| ||| | | ||||| | | ||||| | |||||||||||  |  ||||||||||||||||||||||||    
T  14018796 aaatgaaatacttttggaaaaaggtcagattaaagaagaattatcctccttttcaaggatatctcgaggatgtaaactttcatttgaatttaa 14018888  T

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Target: scaffold1089 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 705 - 610
Alignment:
Q  2 attttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatcgaagttact 97  Q
    ||||||||||||||||| |||||  || | |||| |||||||| ||||||| |||| ||||| ||  |||||||||| ||||||||||| ||||||    
T  705 attttaaactttgaaggatcggctaataaccttctatttgcaacatatattctgcagaatgctaggtttttacaagatatgacaatcgacgttact 610  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 2467610 - 2467516
Alignment:
Q  2 attttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatcgaagttac 96  Q
    |||||||| |||||||| || ||  |||||||||||||||||| |||||| ||||| ||||  ||  |||||||| ||||||||||||| |||||    
T  2467610 attttaaattttgaagggtctgcaaatgatcttcgatttgcaacatatatattgcagaatgggagaattttacaaaacatgacaatcgacgttac 2467516  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 14308586 - 14308647
Alignment:
Q  27 atgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaatc 88  Q
    |||||||||||||||||| |||||||||||| || ||||| | ||| |||||||||||||||    
T  14308586 atgatcttcgatttgcaacatatattttgcagaacgcaagacgtttgcaagacatgacaatc 14308647  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 31262474 - 31262546
Alignment:
Q  15 aaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgacaat 87  Q
    |||||||||| |||||| | |||||||| | |||||||||||| ||||| | | | |||||||||||| ||||    
T  31262474 aaggctcggcagatgatatgcgatttgctacatatattttgcagaatgcgaatatcttacaagacatggcaat 31262546  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 8794149 - 8794187
Alignment:
Q  28 tgatcttcgatttgcaagatatattttgcataatgcaag 66  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  8794149 tgatcttcaatttgcaagatatattttgcagaatgcaag 8794187  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 19316533 - 19316476
Alignment:
Q  135 aagaactgtactcctatccaaggatatctacaacatgtaaactttcatttgaatttaa 192  Q
    ||||| ||| |||||||||||||||||||  |  ||||||||||||||||||| ||||    
T  19316533 aagaattgtcctcctatccaaggatatctcgaggatgtaaactttcatttgaacttaa 19316476  T

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