View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_low_30 (Length: 227)
Name: NF4072_low_30
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_low_30 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29938378 - 29938151
Alignment:
| Q |
1 |
atatgtggcatcttgggattgagatagtgaaatctacactattaagtcgaaagaataaaaagttattcattggtggtcatgcgttcataataaaataagt |
100 |
Q |
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| T |
29938378 |
atatgtggcatcttgggattgaggtagtgagatctacactattaagtcgaaagaataaaaagttatccatcgatggtcatgcgttcatgataaaataagt |
29938279 |
T |
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| Q |
101 |
cttgaatacacttctagtgtacttcctcccttcttgagtag-ggggagtattagaaatagggtagataatgagtcgagtcgaatgctctagagcttgact |
199 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29938278 |
tttgtatacacttctagtgtacttcctcccttcttgagtaggggggagtattagaaatagggtagataatgagtcgagtcgaatgctctagagcttgact |
29938179 |
T |
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| Q |
200 |
caatatgaatttgttcaacttaaaactt |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29938178 |
caatatgaatttgttcaacttaaaactt |
29938151 |
T |
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