View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4072_low_5 (Length: 507)

Name: NF4072_low_5
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4072_low_5
NF4072_low_5
[»] chr5 (22 HSPs)
chr5 (226-489)||(10215642-10215905)
chr5 (24-329)||(10212170-10212475)
chr5 (20-262)||(13855925-13856167)
chr5 (24-319)||(10105801-10106097)
chr5 (24-255)||(10109214-10109445)
chr5 (23-296)||(10102715-10102991)
chr5 (24-263)||(10209685-10209924)
chr5 (20-163)||(12104608-12104751)
chr5 (33-211)||(12109354-12109533)
chr5 (23-174)||(9674763-9674918)
chr5 (114-255)||(9660199-9660340)
chr5 (356-489)||(13854744-13854877)
chr5 (114-192)||(10215906-10215984)
chr5 (13-74)||(10215979-10216040)
chr5 (112-166)||(37278735-37278789)
chr5 (111-170)||(3467667-3467726)
chr5 (349-400)||(10104247-10104298)
chr5 (349-400)||(10107727-10107778)
chr5 (431-485)||(10211906-10211960)
chr5 (446-489)||(10104351-10104394)
chr5 (34-84)||(10219135-10219185)
chr5 (182-262)||(9674059-9674140)
[»] chr8 (5 HSPs)
chr8 (111-255)||(31555089-31555233)
chr8 (111-255)||(31878236-31878380)
chr8 (33-238)||(31558191-31558396)
chr8 (118-165)||(13568429-13568476)
chr8 (111-220)||(4042194-4042303)
[»] chr1 (11 HSPs)
chr1 (41-215)||(10542321-10542496)
chr1 (108-239)||(42202365-42202496)
chr1 (108-239)||(42211233-42211364)
chr1 (112-246)||(45151994-45152128)
chr1 (107-239)||(2176292-2176424)
chr1 (108-216)||(42409594-42409702)
chr1 (111-246)||(45316380-45316515)
chr1 (111-175)||(43014366-43014430)
chr1 (112-222)||(51795018-51795128)
chr1 (108-174)||(42217273-42217339)
chr1 (110-170)||(42417640-42417700)
[»] chr7 (6 HSPs)
chr7 (111-255)||(3649475-3649619)
chr7 (111-255)||(3647026-3647170)
chr7 (120-255)||(3657601-3657736)
chr7 (116-169)||(3641211-3641264)
chr7 (183-222)||(3656176-3656215)
chr7 (128-175)||(19523283-19523330)
[»] chr4 (6 HSPs)
chr4 (107-213)||(25698804-25698910)
chr4 (111-255)||(17889422-17889566)
chr4 (126-207)||(46362507-46362588)
chr4 (130-178)||(36790854-36790902)
chr4 (111-175)||(49588194-49588258)
chr4 (125-165)||(20918685-20918725)
[»] chr3 (2 HSPs)
chr3 (108-221)||(46446211-46446324)
chr3 (111-250)||(21884021-21884160)
[»] chr6 (2 HSPs)
chr6 (111-175)||(33891592-33891656)
chr6 (112-166)||(27868671-27868725)
[»] chr2 (4 HSPs)
chr2 (120-214)||(26568347-26568441)
chr2 (106-175)||(5900520-5900589)
chr2 (138-175)||(43633443-43633480)
chr2 (113-166)||(2341338-2341391)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 226 - 489
Target Start/End: Complemental strand, 10215905 - 10215642
Alignment:
Q  226 tagggctctgcaattttagttcaatattttcctattcctatttttatgtggttactatgtttttggtatgctacttgtttaagggagttctttaccaatt 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||  ||||||||||||||||| ||    
T  10215905 tagggctctgcaattttagttcaatattttcctattcctatttttatgtggtaactatgtttctgatatgctacttgtgcaagggagttctttaccactt 10215806  T
Q  326 gtataatatgtttaagccgattaattagtcttgagatgattgcataacttcatagacatatgttgacttgatttactgataataatgattagttatatga 425  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  10215805 gtataatatgtttaagctgattaattagtcttgagatgattgcataacttcatagacctatgttgacttgatttattgataataatgattagttatatga 10215706  T
Q  426 taatcagtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatt 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10215705 taatcagtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatt 10215642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 24 - 329
Target Start/End: Complemental strand, 10212475 - 10212170
Alignment:
Q  24 gtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccgtgt 123  Q
    ||||||||||| |||| ||||| |||||| ||||||||||||||||| | ||||||||||| ||| |  ||||||||||||   | | ||||||||||||    
T  10212475 gtgtctgataatgtcccacatctaccaatgcataaactaaactatgctgatcacatataaaatgaaatgacctctacctccaataggtacggagccgtgt 10212376  T
Q  124 gttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttcttta 223  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||||||||||||||||||||| || | |    
T  10212375 gatgatcacatagcgaactattctttcgccttttactaaagaatactgtgtgagtgtcacaattagcggcatacgctagtttttggaagagtcctcctca 10212276  T
Q  224 catagggctctgcaattttagttcaatattttcctattcctatttttatgtggttactatgtttttggtatgctacttgtttaagggagttctttaccaa 323  Q
    |  | ||||||||||||||||| |||||||||| ||||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  10212275 ccgaaggctctgcaattttagtacaatattttcttattcttgtttttttgtggttactatgttattggtatgctacttgtttaagggagttctttaccac 10212176  T
Q  324 ttgtat 329  Q
    ||||||    
T  10212175 ttgtat 10212170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 13855925 - 13856167
Alignment:
Q  20 gtgggtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagcc 119  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||  || || ||||||||||| |  ||||||||||||    
T  13855925 gtgggtgtctgatagagtcccacatcaaccaattcataaactaaactatgcagttcacatataaaaagaaaggacctctacctcttacaagcacggagcc 13856024  T
Q  120 gtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttc 219  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| ||||||||||| |||||| ||    
T  13856025 gagtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgttgctattagcggcatacactagtttttgggagagtcctc 13856124  T
Q  220 tttacatagggctctgcaattttagttcaatattttcctattc 262  Q
    || ||| |||||| |||||||||||||||||||||||||||||    
T  13856125 ttcacagagggctttgcaattttagttcaatattttcctattc 13856167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 24 - 319
Target Start/End: Original strand, 10105801 - 10106097
Alignment:
Q  24 gtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccgtgt 123  Q
    |||||||| ||||||| |||||| ||| |||||||||||||||||||||||  |||||||| ||| || | |||||| |  || ||||||||||||||||    
T  10105801 gtgtctgacaaagtcccacatcgcccagttcataaactaaactatgcagctttcatataaaatgaaaggatctctactttttttaagcacggagccgtgt 10105900  T
Q  124 gttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttcttta 223  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||    
T  10105901 gatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcataattagcggcatacgctagtttttggaagagtcctcttta 10106000  T
Q  224 catagggctctgcaattttagttcaatattttcctattcctatttttatgtggttactatgt-ttttggtatgctacttgtttaagggagttcttta 319  Q
       |||||||||||| ||||||||||| ||||  ||||| | |||| |||| ||| ||||||  | |||||||||| |||||||||| |||| ||||    
T  10106001 ttgagggctctgcaaatttagttcaatttttttgtattctttttttaatgtagttgctatgtaatatggtatgctatttgtttaaggtagttattta 10106097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 10109214 - 10109445
Alignment:
Q  24 gtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaa-agcacggagccgtg 122  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||  ||||||||  || || |||||| |||  | || | ||||||||||||    
T  10109214 gtgtctgataaagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaaagatagaacctct-ccttgtaaagatcacggagccgtg 10109312  T
Q  123 tgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttcttt 222  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  10109313 tgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagtttttggaagagtcctcttt 10109412  T
Q  223 acatagggctctgcaattttagttcaatatttt 255  Q
    |   |||||||||||||||||||| ||| ||||    
T  10109413 atggagggctctgcaattttagttaaatttttt 10109445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 10102715 - 10102991
Alignment:
Q  23 ggtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagc--acggagccg 120  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||||| ||| || ||||||  || |  ||||| | ||  |||||    ||||||| |    
T  10102715 ggtgtcggataaactcccacatcgaccaattcataaactaaactatgctgcttacttataaaacgaaaagacctc-agcttgttaaaatttacggagctg 10102813  T
Q  121 tgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttct 220  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| |||    
T  10102814 tgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacactagtttttggaagagtcctct 10102913  T
Q  221 ttacatagggctctgcaattttagttcaatattttcctattc--ctatttttatgtggttactatgtttttggtatgc 296  Q
    | |   |||||||||||| ||||||||||||||||  |||||   ||||||||||||||| ||||||| |||||||||    
T  10102914 tcattgagggctctgcaaatttagttcaatatttttgtattcttttatttttatgtggttgctatgttattggtatgc 10102991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 24 - 263
Target Start/End: Complemental strand, 10209924 - 10209685
Alignment:
Q  24 gtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccgtgt 123  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||||||||  ||||||||  || || |||| | | |  | ||| |||||||||||||    
T  10209924 gtgtctaataaagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaaagataggacctatccttgttaaaatcacggagccgtgt 10209825  T
Q  124 gttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttcttta 223  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||| ||||||||||||||||  ||||||    
T  10209824 gatgaacacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaatgagtggcatacgttagtttttggaagagttctcttta 10209725  T
Q  224 catagggctctgcaattttagttcaatattttcctattcc 263  Q
       ||||||||||||||||||||||||  ||| |||||||    
T  10209724 tggagggctctgcaattttagttcaatgattttctattcc 10209685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 12104751 - 12104608
Alignment:
Q  20 gtgggtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagcc 119  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||  || || |||||||| || |  ||||| ||||||    
T  12104751 gtgggtgtctaataaagtcccacatcgaccaattcataaactaaattatgcagctcacatataaaaagataggacctctacttcttgtaagcatggagcc 12104652  T
Q  120 gtgtgttgatcacatagcgaactattctttcgccttttactaaa 163  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  12104651 gtgtgatgatcacatagcgaactattctttcgccttttactaaa 12104608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 12109533 - 12109354
Alignment:
Q  33 aaagtccaacatcgaccaattcataaact-aaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccgtgtgttgatca 131  Q
    ||||||| |||||||||||| |||||||| |||||| ||  |||| ||||||| ||| |  ||||||||||||   |||||||||||||  || ||||||    
T  12109533 aaagtcccacatcgaccaatgcataaactgaaactaagcttctcatatataaaatgaaatgacctctacctccaataagcacggagccgcctgatgatca 12109434  T
Q  132 catagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaa 211  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||||    
T  12109433 catagcaaactattctttcgccttttactaaagaataccgtgtgagcgtcacaatttgtggcatacgctagtttttggaa 12109354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 9674918 - 9674763
Alignment:
Q  23 ggtgtctga-taaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccg- 120  Q
    ||||||||| |||||||| |||||  ||||| ||||| ||||||||||| ||||||||||||| | | || ||||||||||  ||||||||||||||||     
T  9674918 ggtgtctgactaaagtcccacatcctccaatgcataagctaaactatgctgctcacatataaaattaaagaacctctacctttttaaagcacggagccgc 9674819  T
Q  121 --tgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgt 174  Q
      |||| |||||||| || |||||||||||||||||||||||||||||||||||||    
T  9674818 cgtgtgatgatcacaaagtgaactattctttcgccttttactaaagaataccgtgt 9674763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 114 - 255
Target Start/End: Complemental strand, 9660340 - 9660199
Alignment:
Q  114 ggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaaga 213  Q
    |||||| |||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||| | | ||||||||| ||||| || |||||||||||||    
T  9660340 ggagccttgtgatgatcacatagcgaactattattttgccttttactaaagaatactgtgtgaacgtcacaattagcagcatatgccagtttttggaaga 9660241  T
Q  214 gtcttctttacatagggctctgcaattttagttcaatatttt 255  Q
    ||| | || |   || ||||||||||||||||||||||||||    
T  9660240 gtcctattcatggagtgctctgcaattttagttcaatatttt 9660199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 489
Target Start/End: Original strand, 13854744 - 13854877
Alignment:
Q  356 ttgagatgattgcataacttcatagacatatgttgacttgatttactgataataatgattagttatatgataatcagtaacattctggagatagtggttt 455  Q
    |||| ||||| ||||||||||||||||  ||| ||||||||||||  ||| | ||||||| ||||| |||||||||||||| ||| ||||||||| ||||    
T  13854744 ttgaaatgatagcataacttcatagaccaatgctgacttgatttatggatgacaatgatttgttatttgataatcagtaacgttccggagatagtagttt 13854843  T
Q  456 ctgcaatacaatgttactcttggcactagtcatt 489  Q
     |||||| | |||||| |||| ||||||||||||    
T  13854844 ttgcaatgccatgttattcttagcactagtcatt 13854877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 10215984 - 10215906
Alignment:
Q  114 ggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcgg 192  Q
    ||||| |||||||||||||||||  ||||||||||| |||||||||||||||||||| ||||||  |||||||||||||    
T  10215984 ggagctgtgtgttgatcacatagtaaactattcttttgccttttactaaagaataccttgtgagtgttacaattagcgg 10215906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 10216040 - 10215979
Alignment:
Q  13 agaacctgtgggtgtctgataaagtccaacatcgaccaattcataaactaaactatgcagct 74  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  10216040 agaacatgtgggtgtctgataaagtcccacatcgaccaattcagaaactaaactatggagct 10215979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 37278789 - 37278735
Alignment:
Q  112 acggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaa 166  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||    
T  37278789 acggagccgtgtgatgagcacataacgaactattctttcgccttttactaaagaa 37278735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 3467726 - 3467667
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaatacc 170  Q
    |||| ||||||||| ||| | || ||| ||||||||||||||||||||||||||||||||    
T  3467726 cacgcagccgtgtgatgagctcaaagcaaactattctttcgccttttactaaagaatacc 3467667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 10104247 - 10104298
Alignment:
Q  349 attagtcttgagatgattgcataacttcatagacatatgttgacttgattta 400  Q
    |||||||||||||||||||||||| |||||||||   |||||||||||||||    
T  10104247 attagtcttgagatgattgcataatttcatagaccattgttgacttgattta 10104298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 10107727 - 10107778
Alignment:
Q  349 attagtcttgagatgattgcataacttcatagacatatgttgacttgattta 400  Q
    |||||||||||||||||||||||| |||||||||   |||||||||||||||    
T  10107727 attagtcttgagatgattgcataatttcatagaccattgttgacttgattta 10107778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 10211960 - 10211906
Alignment:
Q  431 agtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagt 485  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||  |||||||    
T  10211960 agtaacattctggagatggtggtttctgcaataccattttactcttaacactagt 10211906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 489
Target Start/End: Original strand, 10104351 - 10104394
Alignment:
Q  446 atagtggtttctgcaatacaatgttactcttggcactagtcatt 489  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||    
T  10104351 atagtagtttctgcaataccatgttactcttagcactagtcatt 10104394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 10219185 - 10219135
Alignment:
Q  34 aagtccaacatcgaccaattcataaactaaactatgcagctcacatataaa 84  Q
    |||||| ||||| |||||||||||||||||||||||| ||| || ||||||    
T  10219185 aagtcccacatcaaccaattcataaactaaactatgctgcttacttataaa 10219135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 9674140 - 9674059
Alignment:
Q  182 acaattagcggcatacgctagtttttgg-aagagtcttctttacatagggctctgcaattttagttcaatattttcctattc 262  Q
    |||||| |||||||| |||||||||||| ||||||| |||| |   ||||||||||||| ||||| |||| |||||| ||||    
T  9674140 acaatttgcggcatatgctagtttttggaaagagtcatcttcattgagggctctgcaatattagtacaatgttttcccattc 9674059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 31555233 - 31555089
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  31555233 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagtttttgga 31555134  T
Q  211 agagtcttctttacatagggctctgcaattttagttcaatatttt 255  Q
    |||||||||||||   ||||||||||||| |||||| ||| ||||    
T  31555133 agagtcttctttattgagggctctgcaatattagtttaatttttt 31555089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 111 - 255
Target Start/End: Original strand, 31878236 - 31878380
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  31878236 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagtttttgga 31878335  T
Q  211 agagtcttctttacatagggctctgcaattttagttcaatatttt 255  Q
    |||||||||||||   ||||||||||||| |||||| ||| ||||    
T  31878336 agagtcttctttattgagggctctgcaatattagtttaatttttt 31878380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 33 - 238
Target Start/End: Complemental strand, 31558396 - 31558191
Alignment:
Q  33 aaagtccaacatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctccttaaagcacggagccgtgtgttgatcac 132  Q
    ||||||| |||||| ||||| |||||||  ||| | || |||  |||||||| ||| ||||| |||||||  |  ||||| ||||||||||| |||||||    
T  31558396 aaagtcccacatcggccaatgcataaacccaaccaagctgcttgcatataaactgaaagcacttctaccttttataagcatggagccgtgtgatgatcac 31558297  T
Q  133 atagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggct 232  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||||| |||||||| ||| ||   ||||||    
T  31558296 atagcgaactattctttcgccttttactaaagaataccgtgtgaacgtcacaattagcggcatacgttagtttttagaagagtcctctatattgagggct 31558197  T
Q  233 ctgcaa 238  Q
    ||||||    
T  31558196 ctgcaa 31558191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 13568476 - 13568429
Alignment:
Q  118 ccgtgtgttgatcacatagcgaactattctttcgccttttactaaaga 165  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  13568476 ccgtgtgataatcacatagcgaactattctttcgccttttactaaaga 13568429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 4042303 - 4042194
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 210  Q
    |||| ||||||||| ||| | || ||| |||||||||||||||||| |||||||||||| ||| |  | | || |||| ||||||| || | ||||||||    
T  4042303 cacgcagccgtgtgatgagctcaaagcaaactattctttcgcctttgactaaagaatactgtgggctcgtcactattaacggcatatgccaatttttgga 4042204  T
Q  211 agagtcttct 220  Q
    ||||||||||    
T  4042203 agagtcttct 4042194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 10542321 - 10542496
Alignment:
Q  41 acatcgaccaattcataaactaaactatgcagctcacatataaattgacagcacctctacctcct-taaagcacggagccgtgtgttgatcacatagcga 139  Q
    |||||||| ||| ||| |||| ||||| || ||||||||||||| ||| || || |||| |   | ||||||||||||||||||| ||||||||||||||    
T  10542321 acatcgactaatacatcaacttaactaagctgctcacatataaaatgaaaggacatctaacagttataaagcacggagccgtgtgatgatcacatagcga 10542420  T
Q  140 actattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagt 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10542421 actattctttcgccttttactaaagaataccgtgtgagcgttacaattagcggcatacgctagtttttggaagagt 10542496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 42202496 - 42202365
Alignment:
Q  108 aagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||    
T  42202496 aagcacggagccgtgtgttgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttagcggcatacgctagttttt 42202397  T
Q  208 ggaagagtcttctttacatagggctctgcaat 239  Q
    |||||||||||||||    |||||||||||||    
T  42202396 ggaagagtcttctttttggagggctctgcaat 42202365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 42211364 - 42211233
Alignment:
Q  108 aagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 207  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||    
T  42211364 aagcacggagccgtgtgttgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttagcggcatacgctagttttt 42211265  T
Q  208 ggaagagtcttctttacatagggctctgcaat 239  Q
    |||||||||||||||    |||||||||||||    
T  42211264 ggaagagtcttctttttggagggctctgcaat 42211233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 112 - 246
Target Start/End: Original strand, 45151994 - 45152128
Alignment:
Q  112 acggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaa 211  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||  | ||| ||||||||||||||||||||||||||    
T  45151994 acggagccgtgtgataatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagtgtcacatttagcggcatacgctagtttttggaa 45152093  T
Q  212 gagtcttctttacatagggctctgcaattttagtt 246  Q
    ||||| |||||||  ||||||||||||| ||||||    
T  45152094 gagtcctctttacggagggctctgcaatattagtt 45152128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 2176424 - 2176292
Alignment:
Q  107 aaagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttt 206  Q
    ||||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||  | ||| |||||||||||||||||||||    
T  2176424 aaagcacggagacgtgtgataatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagtgtcacatttagcggcatacgctagtttt 2176325  T
Q  207 tggaagagtcttctttacatagggctctgcaat 239  Q
    |||||||||||| || ||  ||| |||||||||    
T  2176324 tggaagagtctttttaacggaggactctgcaat 2176292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 42409594 - 42409702
Alignment:
Q  108 aagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 207  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||| || |||||| ||||||||    
T  42409594 aagcacggagctgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttaacgacatacgttagttttt 42409693  T
Q  208 ggaagagtc 216  Q
    |||||||||    
T  42409694 ggaagagtc 42409702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 111 - 246
Target Start/End: Complemental strand, 45316515 - 45316380
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 210  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| | | | ||  ||| ||||||||| |||||||||||    
T  45316515 cacggagccgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcaacgtcacttttaacggcatacgttagtttttgga 45316416  T
Q  211 agagtcttctttacatagggctctgcaattttagtt 246  Q
    |||| | |||| |   ||||||||||||| ||||||    
T  45316415 agagccctcttaattgagggctctgcaatattagtt 45316380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 43014430 - 43014366
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 175  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43014430 cacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtg 43014366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 51795018 - 51795128
Alignment:
Q  112 acggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaa 211  Q
    ||||| ||||||| |||| ||||||| ||||||| |||||||||||||||||||||| ||| | | | | ||| || |||||||| ||||||||||||||    
T  51795018 acggaaccgtgtgatgatgacatagcaaactattgtttcgccttttactaaagaatagcgtatcaacgtcacattttgcggcatatgctagtttttggaa 51795117  T
Q  212 gagtcttcttt 222  Q
    ||||| |||||    
T  51795118 gagtcatcttt 51795128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 42217339 - 42217273
Alignment:
Q  108 aagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgt 174  Q
    ||||| ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  42217339 aagcatggagccgtgtgatgacgacatagcgaactattctttcgccttttactaaagaatactgtgt 42217273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 42417640 - 42417700
Alignment:
Q  110 gcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaatacc 170  Q
    ||||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  42417640 gcacggagctgtgtgatgatgacatagcgaattattctttcgccttttactaaagaatacc 42417700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 7e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 111 - 255
Target Start/End: Original strand, 3649475 - 3649619
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 210  Q
    |||||||  ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||||||||    
T  3649475 cacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttgga 3649574  T
Q  211 agagtcttctttacatagggctctgcaattttagttcaatatttt 255  Q
    || ||| |||| |   ||||||||||||| |||||||||| ||||    
T  3649575 agggtcctcttaattgagggctctgcaatattagttcaatttttt 3649619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 111 - 255
Target Start/End: Original strand, 3647026 - 3647170
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 210  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||| | || ||||||||||||| |||||||||| |    
T  3647026 cacggagccgtgtgatgatgacatagcaaactattctttcgccttttactaaagaataccgtgtcagcgtcactattagcggcatacactagtttttgaa 3647125  T
Q  211 agagtcttctttacatagggctctgcaattttagttcaatatttt 255  Q
    || ||| ||||||   ||||||||||||| ||||| |||| ||||    
T  3647126 agggtcctctttattgagggctctgcaatgttagtgcaatgtttt 3647170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 120 - 255
Target Start/End: Original strand, 3657601 - 3657736
Alignment:
Q  120 gtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttc 219  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||| ||||||||||||||  || ||    
T  3657601 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacaaatagcggcatacactagtttttggaaggatcatc 3657700  T
Q  220 tttacatagggctctgcaattttagttcaatatttt 255  Q
    ||||   ||| ||||||||| |||||||||| ||||    
T  3657701 tttatcgaggactctgcaatattagttcaatttttt 3657736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 3641211 - 3641264
Alignment:
Q  116 agccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaatac 169  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  3641211 agccgtgtgatgatgacatagcgaactattctttcgccttttactaaagaatac 3641264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 3656176 - 3656215
Alignment:
Q  183 caattagcggcatacgctagtttttggaagagtcttcttt 222  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  3656176 caattaggggcatacgctagtttttggaagagtcctcttt 3656215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 19523330 - 19523283
Alignment:
Q  128 atcacatagcgaactattctttcgccttttactaaagaataccgtgtg 175  Q
    |||||| ||||||  ||||||||||||||||||||||||| |||||||    
T  19523330 atcacagagcgaataattctttcgccttttactaaagaattccgtgtg 19523283  T

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Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 25698804 - 25698910
Alignment:
Q  107 aaagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttt 206  Q
    |||||||||||| ||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||    
T  25698804 aaagcacggagctgtgtgatgatcacatagtggactattctttcgccttttattaaagaataccgtgtgagcgtcataattagcggcatacgctagtttt 25698903  T
Q  207 tggaaga 213  Q
    |||||||    
T  25698904 tggaaga 25698910  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 111 - 255
Target Start/End: Original strand, 17889422 - 17889566
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 210  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||  | | || |  |||||||||||||| |||||| |    
T  17889422 cacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtgcacgtcactaaaagcggcatacgctaatttttgaa 17889521  T
Q  211 agagtcttctttacatagggctctgcaattttagttcaatatttt 255  Q
    |||||| || |||   |||| |||||||| |||||| ||||||||    
T  17889522 agagtcctccttaatgagggttctgcaatattagtttaatatttt 17889566  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 46362588 - 46362507
Alignment:
Q  126 tgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 207  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||| ||| ||||| ||| ||||||| ||||| ||||||||    
T  46362588 tgatgacatagcgaactattatttcgctttttactaaagaataccatgtcagcatcacatttagcggtatacgttagttttt 46362507  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 36790854 - 36790902
Alignment:
Q  130 cacatagcgaactattctttcgccttttactaaagaataccgtgtgagc 178  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36790854 cacaaagcgaactattctttcgccttttactaaagaataccgtgtgagc 36790902  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 49588258 - 49588194
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 175  Q
    |||||| ||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||    
T  49588258 cacggaaccgtgtgataagcacaaagcgaactattctttcgccttttactaaagaataccgtgtg 49588194  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 20918685 - 20918725
Alignment:
Q  125 ttgatcacatagcgaactattctttcgccttttactaaaga 165  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  20918685 ttgatcacatagcaaactattctttcgccttttactaaaga 20918725  T

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Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 46446211 - 46446324
Alignment:
Q  108 aagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 207  Q
    ||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||   |||||||||||||||||    
T  46446211 aagcatggagccttgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgttactatttttggcatacgctagttttt 46446310  T
Q  208 ggaagagtcttctt 221  Q
    ||||||||||||||    
T  46446311 ggaagagtcttctt 46446324  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 21884160 - 21884021
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 210  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || | ||    ||||||||||| || |||||| |    
T  21884160 cacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtgcgcgtcacttaaagcggcatacgttaatttttgaa 21884061  T
Q  211 agagtcttctttacatagggctctgcaattttagttcaat 250  Q
    |||||| | || ||  ||||||||||||| | ||||||||    
T  21884060 agagtccttttcaccgagggctctgcaatataagttcaat 21884021  T

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Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 33891592 - 33891656
Alignment:
Q  111 cacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 175  Q
    |||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||    
T  33891592 cacggaaccgtgtgataagcacatagcgaactattctttcgccttttactaaagaataccgtgtg 33891656  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 27868725 - 27868671
Alignment:
Q  112 acggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaa 166  Q
    ||||||||||||  |||||||||||| ||||||| ||||| |||||||| |||||    
T  27868725 acggagccgtgtaatgatcacatagcaaactattgtttcgtcttttacttaagaa 27868671  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 26568347 - 26568441
Alignment:
Q  120 gtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagag 214  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| || | ||    |||||||||||||| |||||| |||||    
T  26568347 gtgtgatgagcacatagcgaactattcttttgccttttactaaagaataccgtgtgcgcgtcacttaaagcggcatacgctaatttttgaaagag 26568441  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 5900520 - 5900589
Alignment:
Q  106 taaagcacggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 175  Q
    |||| |||||| ||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||    
T  5900520 taaatcacggaaccgtgtgataagcacaaagcgaactattctttcgccttttactaaagaataccgtgtg 5900589  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 43633480 - 43633443
Alignment:
Q  138 gaactattctttcgccttttactaaagaataccgtgtg 175  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43633480 gaactattctttcgccttttactaaagaataccgtgtg 43633443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 2341391 - 2341338
Alignment:
Q  113 cggagccgtgtgttgatcacatagcgaactattctttcgccttttactaaagaa 166  Q
    ||||||| |||  ||| |||| ||||||||||||||||||||||||| ||||||    
T  2341391 cggagccatgtagtgagcacaaagcgaactattctttcgccttttacaaaagaa 2341338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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