View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_low_7 (Length: 458)
Name: NF4072_low_7
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 134 - 440
Target Start/End: Original strand, 43362519 - 43362826
Alignment:
| Q |
134 |
caactgtattaaaatattgttaattcttttagtaacttcctctaaaagcatattataaaacatctcatttagcaaagtgtattcagatataccattttta |
233 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43362519 |
caactgtactaaaatattgttaattcttttagtaacttcctctaaaagcatattataaaacatctcatttagcaaagtgtattcagatataccattttta |
43362618 |
T |
|
| Q |
234 |
actt-cttagtcttgattccttttatatttatcaaacttaatcttgattccaaataggggatcaggagaagaatnnnnnnntacaagtcagttgccactt |
332 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| |
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| T |
43362619 |
acttccttagtcttgattccttttatatttatcaaacttaatcttgattacaaataggggatcaggagaagaataaaaaaatagaagtcagttgccactt |
43362718 |
T |
|
| Q |
333 |
tttgatttatgatacagcatgtaacgctttgtacagcagtgtcaactnnnnnnntgagcaatgagagaagcatagaaaaagtggaaacaatatctggtgc |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43362719 |
tttgatttatgatacagcatgtaacgctttgtacagcagtgtcaactaaaaaaatgagcaatgagagaagcatagaaaaagtggaaacaatatctggtgc |
43362818 |
T |
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| Q |
433 |
taaggatt |
440 |
Q |
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|||||||| |
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| T |
43362819 |
taaggatt |
43362826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 43360409 - 43360460
Alignment:
| Q |
17 |
atgaaacatagagtcgatgacaacaactcgtgaaacaaacccacatttctct |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43360409 |
atgaaacatagagtcgatgacaacaactcgtgaaacaaacccacatttctct |
43360460 |
T |
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