View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4072_low_9 (Length: 424)
Name: NF4072_low_9
Description: NF4072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4072_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 44493388 - 44493222
Alignment:
| Q |
20 |
agtttctctgtacgtagagacagcaagatatatacttatcttcattcaagttaaatgctttattagtttatttgaactctctctatatggaaggttaagc |
119 |
Q |
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| T |
44493388 |
agtttctctgtacgtagagacagcaagatatatacttatcttcattcaagttaaatgctttattagtttatttgaactctctctatatggaaggttaagc |
44493289 |
T |
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| Q |
120 |
atacttgtatcatttcgttctatatatctacactgactaatctagtagtagcagccctttcctataa |
186 |
Q |
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| T |
44493288 |
atacttgtatcatttcgttctatatatctacactgactaatctagtagtagcagccctttcctataa |
44493222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 315 - 403
Target Start/End: Complemental strand, 44492673 - 44492585
Alignment:
| Q |
315 |
ggatccccctgaactactcagtgtacgtgtctaattcaactatacaaaatcggtttataaaaactatgtacttataaacaaatgttcat |
403 |
Q |
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| T |
44492673 |
ggatccccctgaactactcaatgtacgtgtttaattcaactatacaaaatcgatttataaaaactatctacttataaacaaatgttcat |
44492585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 44492811 - 44492741
Alignment:
| Q |
184 |
taacaaagcaacttagaggttggggaaccc-------aagtaaccaaatttagattcaatttttcatgtta |
247 |
Q |
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| T |
44492811 |
taacaaagcaacttagaggttggggaacccaagtcccaagtaaccaaatttagatttaatttttcatgtta |
44492741 |
T |
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