View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4073_high_1 (Length: 957)

Name: NF4073_high_1
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4073_high_1
NF4073_high_1
[»] chr2 (8 HSPs)
chr2 (109-949)||(21433674-21434515)
chr2 (699-949)||(27152644-27152895)
chr2 (818-934)||(27075494-27075610)
chr2 (112-258)||(27153196-27153337)
chr2 (851-934)||(27028509-27028592)
chr2 (570-635)||(27152991-27153055)
chr2 (173-256)||(26990180-26990263)
chr2 (863-930)||(26989694-26989761)
[»] chr6 (2 HSPs)
chr6 (173-256)||(34692242-34692325)
chr6 (863-930)||(34691769-34691836)


Alignment Details
Target: chr2 (Bit Score: 786; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 786; E-Value: 0
Query Start/End: Original strand, 109 - 949
Target Start/End: Complemental strand, 21434515 - 21433674
Alignment:
Q  109 tccgccatacctacaacatttgttagcaacattttcatacattttctataaaa-gtggcgacttctgaatcattaagtggatatatatttagcacatttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21434515 tccgccatacctacaacatttgttagcaacattttcatacattttctataaaaagtggcgacttctgaatcattaagtggatatatatttagcacatttg 21434416  T
Q  208 aaactatgagcttggaatatagagaataaactttagaggaatggttcattaaaacaccaagtttaccaataatcaggaaaaaccctcactaataatccaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434415 aaactatgagcttggaatatagagaataaactttagaggaatggttcattaaaacaccaagtttaccaataatcaggaaaaaccctcactaataatccaa 21434316  T
Q  308 gatggtagtcttttataagctttaataaatagatcaattatgatttttatagtcccttgggcacaaactcatgttagaccaaaagagcgattttagaatg 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21434315 gatggtagtcttttataagctttaataaatagatcaattatgatttttatagtcccttgggcacaaactcattttagaccaaaagagcgattttagaatg 21434216  T
Q  408 agatatttgaaggatgctattaatgagttgtatttataacttactagccgattttgtaggatcgtatcatttggttgtttaannnnnnnnaataaagtag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        ||||||||||    
T  21434215 agatatttgaaggatgctattaatgagttgtatttataacttactagccgattttgtaggatcatatcatttggttgtttaattttttttaataaagtag 21434116  T
Q  508 ttttttcccaagtttatttgtgctctaaccaatgaagaatgctagcaatactcttttttccgggaacatgagtgttgaaaagaggtgcattaatatccct 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434115 ttttttcccaagtttatttgtgctctaaccaatgaagaatgctagcaatactcttttttccgggaacatgagtgttgaaaagaggtgcattaatatccct 21434016  T
Q  608 gttccaaatcaattttactttgcaatgattatggagctgttagttcaaacttccaatgatagggcaccaaatcagttttacatttgcatttcatatgact 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21434015 gttccaaatcaattttactttgcaatgattatggagctgttagttcaaacttccaatgatagggcaccaaatcagttttacatttgcatttcatatgact 21433916  T
Q  708 atagagttctttgattcatattatacaactgtgtttaatttgtcaatttgtataggtaaaaagaagtatattttgaaattgttcatagattaactatcac 807  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21433915 atagagttctttgattcatattatacaattgtgtttaatttgtccatttgtataggtaaaaagaagtatattttgaaattgttcatagattaactaccac 21433816  T
Q  808 tacactaaccattccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttct 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21433815 tacactaaccattccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttct 21433716  T
Q  908 gtccccaacacaagattcagatccttctccttcatctcagtc 949  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  21433715 gtccccaacacaagattcagatccttctccttcatttcagtc 21433674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 699 - 949
Target Start/End: Complemental strand, 27152895 - 27152644
Alignment:
Q  699 catatgactatagagttctttgattcatattatacaactgtgtttaatttgtcaatttgtataggtaaaaagaagtatattttgaaattgt-----tcat 793  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||  |||||||||||||||  || |||||| ||| |     ||||    
T  27152895 catatgattatagcgttctttgattcatattatacaattgtgtttagtttgttaattcatataggtaaaaagaaaaatgttttgagattttcatcctcat 27152796  T
Q  794 agattaactatcactacactaaccattccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacct-ttttattatcatcaagaatt 892  Q
    |||||||||||||| |     ||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||| |||| |||||||||||||||    
T  27152795 agattaactatcacga-----accattccaattagataattcagaaaaaaccaatcagaaactagcagtgcactcacctttttttttatcatcaagaatt 27152701  T
Q  893 aggatagaactttctgtccccaacacaagattcagatccttctccttcatctcagtc 949  Q
    |  ||   ||||| |||||||||||||| |||||||||||||| |||||| ||||||    
T  27152700 attattacactttttgtccccaacacaacattcagatccttctgcttcatttcagtc 27152644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 818 - 934
Target Start/End: Original strand, 27075494 - 27075610
Alignment:
Q  818 attccaattacataattcagaaaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaaca 917  Q
    |||| ||||| | ||||| | ||||||||||||||||||||||| |||||||||| ||  |||||||||||||||| ||||||| |||||||||||||||    
T  27075494 attctaattaaacaattccgcaaaaacaagtcagaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaaca 27075593  T
Q  918 caagattcagatccttc 934  Q
    |||||| ||||||||||    
T  27075594 caagatccagatccttc 27075610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 112 - 258
Target Start/End: Complemental strand, 27153337 - 27153196
Alignment:
Q  112 gccatacctacaacatttgttagcaacattttcatacattttctataaaag-tggcgacttctgaatca----ttaagtggatatatatttagcacattt 206  Q
    ||||||||||||||||||||||||||||||||||          ||||||| | | |||||||||||||    ||||||||||| || ||||||||||||    
T  27153337 gccatacctacaacatttgttagcaacattttca----------ataaaaggtagtgacttctgaatcattaattaagtggatagatctttagcacattt 27153248  T
Q  207 gaaactatgagcttggaatatagagaataaactttagaggaatggttcatta 258  Q
    ||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  27153247 gaaactatgagctgggtatttagagaataaactttagaggaatggttcatta 27153196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 851 - 934
Target Start/End: Complemental strand, 27028592 - 27028509
Alignment:
Q  851 gaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttc 934  Q
    ||||||||||| |||||||||| ||  |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  27028592 gaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaacacaagatccagatccttc 27028509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 570 - 635
Target Start/End: Complemental strand, 27153055 - 27152991
Alignment:
Q  570 ggaacatgagtgttgaaaagaggtgcattaatatccctgttccaaatcaattttactttgcaatga 635  Q
    |||| |||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||    
T  27153055 ggaaaatgagtgttgaaaagaggtgcattaatatctcggttccaaatcaa-tttactttgcaatga 27152991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 26990263 - 26990180
Alignment:
Q  173 tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat 256  Q
    ||||||||||| |||||| || ||| ||||||||||| |||||| ||| |  |||||||||||||||||||||||||| |||||    
T  26990263 tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagaggaatgattcat 26990180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 863 - 930
Target Start/End: Complemental strand, 26989761 - 26989694
Alignment:
Q  863 gcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatc 930  Q
    |||||||||| ||  || ||||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  26989761 gcactcacctcttctttgtcatcaagaattatgatagaattttctgtccccaacacaagatccagatc 26989694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 34692325 - 34692242
Alignment:
Q  173 tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagaggaatggttcat 256  Q
    ||||||||||| |||||| || ||| ||||||||||| |||||| ||| |  |||||||||||||||||||||||||| |||||    
T  34692325 tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagaggaatgattcat 34692242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 863 - 930
Target Start/End: Complemental strand, 34691836 - 34691769
Alignment:
Q  863 gcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatc 930  Q
    |||||||||| ||  || ||||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  34691836 gcactcacctcttctttgtcatcaagaattacgatagaattttctgtccccaacacaagatccagatc 34691769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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