View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_high_11 (Length: 349)
Name: NF4073_high_11
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_high_11 |
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| [»] scaffold0687 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 7594700 - 7595018
Alignment:
| Q |
14 |
aggacaaatcgtataaaagaatcttgagtttaatttttaaattgaacaaatttttgttagattatacttacctaacagacaaattctaaattactaagat |
113 |
Q |
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|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||| |
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| T |
7594700 |
aggacaaatcgtttaaaagaatct-gagttcaatttttaaattgaacaaatttttgtcagattatacttatctaacggacaaactctaaattactaagat |
7594798 |
T |
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| Q |
114 |
cttcttcctctaggttaacaccaaaagaataatatgcgcaatcacttgaaatacaactttcacttggtaacttttctatcatatctaagagaaatccacc |
213 |
Q |
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| T |
7594799 |
cttcttcctctagattaacaccaaaaaaataatatgcgcaatcacttgaaatacaactttcacttgataacttttctatcatatctaagagaaatccacc |
7594898 |
T |
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| Q |
214 |
tcatttcctcaatattaaaaggttcaaatttacgttgaactgcaatgataatactaaggtcgaggtgtatatgtggctcccgtgttagaaaatgagcaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7594899 |
tcatttcctcaatattaaaaggttcaaatttacgttgaactgcagtgataatactaaggtcgaggtgtatatgtggcttccgtgttagaaaatgagcaac |
7594998 |
T |
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| Q |
314 |
cacacttccattcatgaatc |
333 |
Q |
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||||||| |||||||||||| |
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| T |
7594999 |
cacactttcattcatgaatc |
7595018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0687 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0687
Description:
Target: scaffold0687; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 4048 - 4366
Alignment:
| Q |
14 |
aggacaaatcgtataaaagaatcttgagtttaatttttaaattgaacaaatttttgttagattatacttacctaacagacaaattctaaattactaagat |
113 |
Q |
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|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||| |
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| T |
4048 |
aggacaaatcgtttaaaagaatct-gagttcaatttttaaattgaacaaatttttgtcagattatacttatctaacggacaaactctaaattactaagat |
4146 |
T |
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| Q |
114 |
cttcttcctctaggttaacaccaaaagaataa-tatgcgcaatcacttgaaatacaactttcacttggtaacttttctatcatatctaagagaaatccac |
212 |
Q |
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||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4147 |
cttcttcctctagattaacaccaaaaaaataaatatgcgcaatcacttgaaatacaactttcacttgataacttttctatcatatctaagagaaatccac |
4246 |
T |
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| Q |
213 |
ctcatttcctcaatattaaaaggttcaaatttacgttgaactgcaatgataatactaaggtcgaggtgtatatgtggctcccgtgttagaaaatgagcaa |
312 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4247 |
ctcatttcctcaat-ttaaaaggttcaaatttacgttgaactgcagtgataatactaaggtcgaggtgtatatgtggcttccgtgttagaaaatgagcaa |
4345 |
T |
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| Q |
313 |
ccacacttccattcatgaatc |
333 |
Q |
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|||||||| |||||||||||| |
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| T |
4346 |
ccacactttcattcatgaatc |
4366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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