View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_high_13 (Length: 317)
Name: NF4073_high_13
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 6088485 - 6088791
Alignment:
| Q |
2 |
ctggctttcttgcctctacttgtgtgtggggatctcatttctctaagtctcctctcttgtgaaagtatttttgctaacctgaatgtattagaataaaaat |
101 |
Q |
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| T |
6088485 |
ctggctttcttgcctctacttgtatgtggggatctcatttctctaagtctcctctcttgtgaaagtatttttgctaacctgaatgtattagaataaatat |
6088584 |
T |
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| Q |
102 |
gttatctatg----taacaataattgtagcataattatactttgagtggtaattaaaatgtaccatcactactggttaatcttaattacctcttgagagc |
197 |
Q |
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| T |
6088585 |
gtcattaattaatataaaaataattgtaacataattataacttgagtggtaattaaaatgtaccgtctctactaatttatcttaattacctcttgagagc |
6088684 |
T |
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| Q |
198 |
atcttcattggtttctccatttgtcagtggctcaaagtggccattttccaaattgactctagagaccggtttctttaacaagttctcgccaatttggcac |
297 |
Q |
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| T |
6088685 |
ttcttcattggtttctccatttgtcagtggctcaaagtgaccattttctaaattgactctagagaccggtttctttaataaattttcaccaatttggcac |
6088784 |
T |
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| Q |
298 |
aggttct |
304 |
Q |
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| T |
6088785 |
agtttct |
6088791 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 46678426 - 46678358
Alignment:
| Q |
23 |
gtgtgtggggatctcatttctctaagtctcctctcttgtgaaagtatttttgctaacctgaatgtatta |
91 |
Q |
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| T |
46678426 |
gtgtgaggggatgtcaattctcgaagcttcctctcttgtgatagtatttttgcaaacctgcatgcatta |
46678358 |
T |
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