View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_high_16 (Length: 259)
Name: NF4073_high_16
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 52477746 - 52477516
Alignment:
| Q |
17 |
aaatcgaggattacccttcataggagagacactgcacttcatggctgccatcaacagtaccaaaggtgtctatgaatttgtccgacttcgccgcctccgg |
116 |
Q |
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| T |
52477746 |
aaatcgaggattacccttcataggagagacactgcacttcatggctgccatcaacagtaccaaaggtgtctatgaatttgtccgacttcgccgcctccgg |
52477647 |
T |
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| Q |
117 |
taaccaaatccgttatttcacttgatttatttttgactctgactctcatgctggttttgtccttggaacttatgttccttatcacttctagtcacaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52477646 |
taaccaaatccgttatttcacttgatttatttttga--ctgactctcatgctggttttgtccttggaacttatgttccttatcacttctagtcacaattg |
52477549 |
T |
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| Q |
217 |
catcttcaaaacaaaacgcaagacacttctctg |
249 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
52477548 |
catcttcaaaacaaaacgcaagacacttctctg |
52477516 |
T |
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