View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_high_8 (Length: 395)
Name: NF4073_high_8
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 1975945 - 1975573
Alignment:
| Q |
18 |
gttcccaattcattggcaacttgttatatcata---ttgtgcaaaaagcgtcttaatcctacatgactttaattaatagattcacacttctaaattacga |
114 |
Q |
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| T |
1975945 |
gttcccaattcattggcaacttgttatatcataatgttgtgcaaaaagcgtcttaatcctacatgactttaattaatagattcacacttctaaattacga |
1975846 |
T |
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| Q |
115 |
ataattacttcaaatttcacaagcatacatactaccaaccttgcattgactatcaaaataaaacatgtggaacacacttaattaactgattcagattttt |
214 |
Q |
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| T |
1975845 |
ataattacttcaaatttcacaagcatacctactaccaaccttgcattgactatcaaaataaaacatgtggaacacacttaattaactgattcagactttt |
1975746 |
T |
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| Q |
215 |
aaattacgattgttacttcaaattccaaaagcatgccactataccaaaccttgcattgactatcaaagccccatgcatgaggaagcactgtttgacggaa |
314 |
Q |
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| T |
1975745 |
aaattacgattgttacttcaaattccaaaagcatgccactataccaaaccttgcattgactatcaaagccccatgcatgaggaagcactgtttgacggaa |
1975646 |
T |
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| Q |
315 |
ctgaagcaacaatatgcagaggagacatcaaaatcatccatgcagaggagaaactcacttctctcgatccttt |
387 |
Q |
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| T |
1975645 |
ctgaagcaacaatatgcagaggagacatcaaaatcatccatgcagaggagaaactcacttctcttgatccttt |
1975573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 116 - 281
Target Start/End: Original strand, 1954724 - 1954891
Alignment:
| Q |
116 |
taattacttcaaatttcacaagcataca--tactaccaaccttgcattgactatcaaaataaaacatgtggaacacacttaattaactgattcagatttt |
213 |
Q |
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|||||||||||||||||| ||| ||| | |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
1954724 |
taattacttcaaatttcataagaatatacgtactacaaactttgcattgactatcaaaataaaacatgaagaacacacttaattaactgattcagaattt |
1954823 |
T |
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| Q |
214 |
taaattacgattgttacttcaaattccaaaagcatgccactataccaaaccttgcattgactatcaaa |
281 |
Q |
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| T |
1954824 |
taaattacgattgttacttcaaattccaaaagaataccactataccaaaccatgcattgactatcaaa |
1954891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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