View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_low_12 (Length: 365)
Name: NF4073_low_12
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 44897116 - 44897466
Alignment:
| Q |
1 |
cctgtagatatagaacttgttgatagagtacatcgcaatggttcacttaacagaagaagaactgagtctaactctgacataaataaagaaggagatcttg |
100 |
Q |
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| T |
44897116 |
cctgtagatatagaacttgttgaaagagtacatcgcaatggttcacttaacagaagaagaactgagtctaactctgacataaataaagaaggagatcttg |
44897215 |
T |
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| Q |
101 |
ttgatgtaacactagatattcacggtaagaaggttgctttacactttacacctgttaccggaaacaataatgatgaagaagatgagaaacttgatttgct |
200 |
Q |
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| T |
44897216 |
ttgatgtaacactagatattcaaggtaagaaggttgctttacactttacacctgttaccggaaacaataattatgaagaagatgagaaacttgatttgct |
44897315 |
T |
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| Q |
201 |
tggcaaaggaatggagaagaaaaggtcttttggtgattcgtttgtgagaactgcttcaaatcatctgaggaaagtttctcaggagttgactcgtttaact |
300 |
Q |
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| T |
44897316 |
tggcaaaggaatggagaagaaaaggtcttttggtgattcgtttgtgagaactgcttcaaatcatctgaggaaagtttctcaggagttgactcgtttaact |
44897415 |
T |
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| Q |
301 |
tctttttcaaaacaagttggagttgaaaaggtgaagcatgctaggactgat |
351 |
Q |
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| T |
44897416 |
tctttttcaaaacaagttggagttgaaaaagtgaagcatgctaggactgat |
44897466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 178 - 321
Target Start/End: Original strand, 44912864 - 44913007
Alignment:
| Q |
178 |
gaagatgagaaacttgatttgcttggcaaaggaatggagaagaaaaggtcttttggtgattcgtttgtgagaactgcttcaaatcatctgaggaaagttt |
277 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| ||| ||||| ||||||||||| | || | ||| | |||| |
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| T |
44912864 |
gaagatgagaaacttgttttgcttggtaaaggaatggagaagaaaagatcttttggtgcttcttttgttagaactgcttcgattcgtatgaaacatgttt |
44912963 |
T |
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| Q |
278 |
ctcaggagttgactcgtttaacttctttttcaaaacaagttgga |
321 |
Q |
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| T |
44912964 |
ctcaggagttgaagaaattaacttctttttcgaaacaagttgga |
44913007 |
T |
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