View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4073_low_13 (Length: 364)

Name: NF4073_low_13
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4073_low_13
NF4073_low_13
[»] chr7 (5 HSPs)
chr7 (116-332)||(5178403-5178623)
chr7 (18-121)||(5177522-5177625)
chr7 (290-332)||(5178682-5178724)
chr7 (41-77)||(8305998-8306034)
chr7 (41-77)||(8552609-8552645)
[»] chr8 (13 HSPs)
chr8 (125-332)||(5194817-5195025)
chr8 (125-332)||(5199061-5199270)
chr8 (144-332)||(5177399-5177589)
chr8 (144-293)||(5184714-5184857)
chr8 (145-332)||(5206823-5207017)
chr8 (248-312)||(6231452-6231514)
chr8 (33-102)||(5175041-5175110)
chr8 (18-103)||(5204175-5204260)
chr8 (33-97)||(5193931-5193995)
chr8 (18-80)||(1797164-1797226)
chr8 (18-91)||(6230610-6230683)
chr8 (287-334)||(5184988-5185033)
chr8 (33-91)||(5183627-5183685)
[»] chr4 (1 HSPs)
chr4 (44-77)||(49611093-49611126)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 116 - 332
Target Start/End: Original strand, 5178403 - 5178623
Alignment:
Q  116 accctaaaggagcattcatcgaggtaccgtatgtcattgtctcccatgttcatatagt-ttagaccatgcttccaacaattggcgattgtcctatttaat 214  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5178403 accccaaaggagcattcatcgaggtaccgtatgtcattgtctcccatgttcatatagtattagaccatgcttccaacaattggcgattgtcctatttaat 5178502  T
Q  215 agaaatagtaaaaattgtattgccatgtttccgttttatgtcagacgcatgcatttatgcttaaaagattttac---tttttattaatatataaaatata 311  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||    
T  5178503 agaaatggtaaaaattgtattcccatgtttccgttttatgtcagacgcatgcatttaggcttaaaagattttacttttttttattaatatataaaatata 5178602  T
Q  312 attattttgtggagcgtctaa 332  Q
    ||| ||||||||||| |||||    
T  5178603 attgttttgtggagcttctaa 5178623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 5177522 - 5177625
Alignment:
Q  18 gttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctattatcgtctgtatattacggtgttggtgctggtagttcagac 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||  |||||||||||||    
T  5177522 gttggagatatctttttgttctgacatgaaggagatcaacattgatgctccaaatctattatcgtttgtatattacagtgttggttgtggtagttcagac 5177621  T
Q  118 ccta 121  Q
    ||||    
T  5177622 ccta 5177625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 5178682 - 5178724
Alignment:
Q  290 ttttattaatatataaaatataattattttgtggagcgtctaa 332  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  5178682 ttttatcaatatataaaatataattattttgtggagcatctaa 5178724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 8305998 - 8306034
Alignment:
Q  41 acatgaaggaggtcaacattgatgctccaaatctatt 77  Q
    ||||||| |||||||||||||||||||||||||||||    
T  8305998 acatgaaagaggtcaacattgatgctccaaatctatt 8306034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 8552645 - 8552609
Alignment:
Q  41 acatgaaggaggtcaacattgatgctccaaatctatt 77  Q
    ||||||| |||||||||||||||||||||||||||||    
T  8552645 acatgaaagaggtcaacattgatgctccaaatctatt 8552609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 125 - 332
Target Start/End: Original strand, 5194817 - 5195025
Alignment:
Q  125 gagcattcatcgaggtaccgtatgtcattgtctcccatgttcatatagt-ttagaccatgcttccaacaattggcgattgtcctatttaatagaaatagt 223  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  5194817 gagcattcattgaggtaccgtatgtcattgtctcccatgttcatatagtattagaccatgcttccaacaattggcgattgtcctatataatagaaaaagt 5194916  T
Q  224 aaaaattgtattgccatgtttccgttttatgtcagacgcatgcatttatgcttaaaagattttactttttattaatatataaaatataattattttgtgg 323  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  5194917 aaaaattgtattgtcatgtttccattttatgtcagacacatgcatttatgcttaaaagatcttactttttatcaatatataaaatataattattttgtgg 5195016  T
Q  324 agcgtctaa 332  Q
    ||| |||||    
T  5195017 agcttctaa 5195025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 125 - 332
Target Start/End: Complemental strand, 5199270 - 5199061
Alignment:
Q  125 gagcattcatcgaggtaccgtatgtcattgtctcccatgttcatatagt-ttagaccatgcttccaacaattggcgattgtcctatttaatagaaatagt 223  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| |||||||||||||  ||    
T  5199270 gagcattcattgtggtaccatatgtcattgtctcccatgttcatatagtattagaccatgcttccaacaatttccgattgtcttatttaatagaaaaggt 5199171  T
Q  224 aaaaattgtattgccatgtttccgttttatgt-cagacgcatgcatttatgcttaaaagattttactttttattaatatataaaatataattattttgtg 322  Q
    ||||  |||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||    
T  5199170 aaaacatgtattgccatgtttctgttttatgtgcagacacatgcatttatgcttaaaagatattactttttatcaatatataaaacataattgttttgtg 5199071  T
Q  323 gagcgtctaa 332  Q
    |||| |||||    
T  5199070 gagcttctaa 5199061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 144 - 332
Target Start/End: Original strand, 5177399 - 5177589
Alignment:
Q  144 gtatgtcattgtctcccatgttcatatagt-ttagaccatgcttccaacaattggcgattgtcctatttaatagaaatagtaaaaattgtattgccatg- 241  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||| || ||||||||||||| ||||     
T  5177399 gtatgtcattgtctcctatgttcatatagtattagaccatgcttcctacaattggtgattgtcctatttaatcgaaaaag-aaaaattgtattgtcatga 5177497  T
Q  242 --tttccgttttatgtcagacgcatgcatttatgcttaaaagattttactttttattaatatataaaatataattattttgtggagcgtctaa 332  Q
      ||||||||||||||||||  |||||||||||| |||||||||||||||||| || |||||||||||||| ||| ||||||||||| |||||    
T  5177498 tgtttccgttttatgtcagaa-catgcatttatgtttaaaagattttacttttgatcaatatataaaatatgattgttttgtggagcttctaa 5177589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 293
Target Start/End: Original strand, 5184714 - 5184857
Alignment:
Q  144 gtatgtcattgtctcccatgttcatatagtttagaccatgcttccaacaattggcgattgtcctatttaatagaaatagtaaaaattgtattgccatgtt 243  Q
    ||||||||||||||| ||||||||| |      |||||||||||| |||||||| ||||||||||||||||  ||| ||||||||||| ||| |||||||    
T  5184714 gtatgtcattgtctcgcatgttcatgt------gaccatgcttcctacaattggtgattgtcctatttaatcaaaaaagtaaaaattgcattaccatgtt 5184807  T
Q  244 tccgttttatgtcagacgcatgcatttatgcttaaaagattttacttttt 293  Q
      | |||||||||||||   ||||||||||||||||||||||||||||||    
T  5184808 atcattttatgtcagacatgtgcatttatgcttaaaagattttacttttt 5184857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 332
Target Start/End: Original strand, 5206823 - 5207017
Alignment:
Q  145 tatgtcattgtctcccatgttcatatagttt-agaccatgcttccaacaattggcgattgtcctat-----ttaatagaaatagtaaaaattgtattgcc 238  Q
    |||||||||||||||||| || ||||| ||| ||| ||||||||| |||  ||| |||||||||||     || || |||| || ||||| | |||||||    
T  5206823 tatgtcattgtctcccatatttatataatttcagaacatgcttcctacatatggtgattgtcctatcctatttcattgaaaaagaaaaaactatattgcc 5206922  T
Q  239 atgtttccgttttatgtcagacgcatgcatttatgcttaaaagat-tttactttttattaatatataaaatataattattttgtggagcgtctaa 332  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||| || ||||||||| |||||||| ||||||||| || |||||||| |||||    
T  5206923 atgttttcgttttatgtcagacacatccatttatgcttaaaagatgttcactttttatcaatatatagaatataattgttgtgtggagcttctaa 5207017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 6231452 - 6231514
Alignment:
Q  248 ttttatgtcagacgcatgcatttatgcttaaaagattttactttttattaatatataaaatataa 312  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6231452 ttttatgtcagac--atgcatttatgcttaaaagattttactttttatcaatatataaaatataa 6231514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 5175041 - 5175110
Alignment:
Q  33 ttgttctgacatgaaggaggtcaacattgatgctccaaatctattatcgtctgtatattacggtgttggt 102  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||| || |||||||| ||||||||||    
T  5175041 ttgttctaacttgaaggaggtcaacattgatgcgccaaatctattattgtgtgtatattgcggtgttggt 5175110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 5204175 - 5204260
Alignment:
Q  18 gttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctattatcgtctgtatattacggtgttggtg 103  Q
    ||||||| |||||  ||||||| || ||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||| |||||    
T  5204175 gttggagttatctaattgttctaacttgaaggaggtcaacattgacgctccaaatctattatcgtgtgtattttatggtggtggtg 5204260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 5193931 - 5193995
Alignment:
Q  33 ttgttctgacatgaaggaggtcaacattgatgctccaaatctattatcgtctgtatattacggtg 97  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||    
T  5193931 ttgttctaacttgaaggaggtcaacattgatgctccaaatctattatcatgtgtatatcacggtg 5193995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 1797226 - 1797164
Alignment:
Q  18 gttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctattatc 80  Q
    ||||||| |||||  ||||||| || |||||||||||||||||||||||||||||||||||||    
T  1797226 gttggagttatctcattgttctaacttgaaggaggtcaacattgatgctccaaatctattatc 1797164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 6230610 - 6230683
Alignment:
Q  18 gttggagatatctttttgttctgacatgaaggaggtcaacattgatgctccaaatctattatcgtctgtatatt 91  Q
    ||||||| |||||  ||||||| || |||||||||| || ||||||||||||||||||||||||| ||||||||    
T  6230610 gttggagttatctgattgttctaacttgaaggaggttaatattgatgctccaaatctattatcgtgtgtatatt 6230683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 5184988 - 5185033
Alignment:
Q  287 actttttattaatatataaaatataattattttgtggagcgtctaatt 334  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||    
T  5184988 actttttattaatatataaaata--attattttgtggagcgtctaatt 5185033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 5183627 - 5183685
Alignment:
Q  33 ttgttctgacatgaaggaggtcaacattgatgctccaaatctattatcgtctgtatatt 91  Q
    ||||||| || |||||||||| || ||||||||||||||||||||||| | ||||||||    
T  5183627 ttgttctaacttgaaggaggttaatattgatgctccaaatctattatcatgtgtatatt 5183685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 49611093 - 49611126
Alignment:
Q  44 tgaaggaggtcaacattgatgctccaaatctatt 77  Q
    |||||||||| |||||||||||||||||||||||    
T  49611093 tgaaggaggttaacattgatgctccaaatctatt 49611126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University