View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_low_14 (Length: 354)
Name: NF4073_low_14
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 5452473 - 5452799
Alignment:
| Q |
15 |
tattccaatatcttgaattaatgaaaaggaaatcaagatataacaattttcttagcaaactctattataagtagcacacctattgttaggtccacctcca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5452473 |
tattccaatatcttgaattaatgaaaaggaaatcaagatataacaattttcttagcaaactctattataagtaccacacctattgttaggtccacctcca |
5452572 |
T |
|
| Q |
115 |
ttttgagaaggcaagcaattacgataggcttgatttgtaggacacttaacagcagcaccattgctgttaccatgtctacctgtttgtgtttgactcaaat |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
5452573 |
ttttgagaaggcaagcaagtacgataggcttgatttataggacacttaacagcagcaccattgttgttaccatttctacctgtttgtgtttgactcaaat |
5452672 |
T |
|
| Q |
215 |
ccaaaagcattcttgctgcatgagaactcatagaaaattcttctgattccaaatcattgttgatgagacaatcctctgaggtacaacccttaatcttcaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5452673 |
ccaaaagcattcttgctgcatgagaactcatagaaaattcttctgattccaaatcattgttgatgagacaatcctctgaggtacaaccctttatcttcaa |
5452772 |
T |
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| Q |
315 |
tgatgttgttttggatagatgtaattg |
341 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
5452773 |
tgatgttgttttggatagatgtaattg |
5452799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 339
Target Start/End: Original strand, 5441722 - 5442046
Alignment:
| Q |
15 |
tattccaatatcttgaattaatgaaaaggaaatcaagatataacaattttcttagcaaactctattataagtagcacacctattgttaggtccacctcca |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5441722 |
tattccaatatcttgaattaatgaaaaggaaatcaagatataacaattttcttagcaaactctattataagtaccacacctattgttaggtccacctcca |
5441821 |
T |
|
| Q |
115 |
ttttgagaaggcaagcaattacgataggcttgatttgtaggacacttaacagcagcaccattgctgttaccatgtctacctgtttgtgtttgactcaaat |
214 |
Q |
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|||||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
5441822 |
ttttgagaaggcaagcaagtacgatagtctttttttataggacacttaacagcagcaccattgttgttaccatttctacctgtttgtgtttgactcaaat |
5441921 |
T |
|
| Q |
215 |
ccaaaagcattcttgctgcatgagaactcatagaaaattcttctgattccaaatcattgttgatgagacaatcctctgaggtacaacccttaatcttcaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5441922 |
ccaaaagcattcttgctgcatgagaactcatagaaaattcttctgattccaaatcattgttgatgagacaatcctctgaggtacaaccctttatcttcaa |
5442021 |
T |
|
| Q |
315 |
tgatgttgttttggatagatgtaat |
339 |
Q |
| |
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||||||||||||| |||||||||| |
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| T |
5442022 |
tgatgttgttttgcttagatgtaat |
5442046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 5378974 - 5379293
Alignment:
| Q |
19 |
ccaatatcttgaattaatgaaaaggaaatcaagatataacaattttcttagcaaactctattataagtagcacacctattgttaggtccacctccatttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
5378974 |
ccaatatcttgaattaatgaaaaggaaatcaagatataa---ttttcttagcaaactctattgtaagtaccacacctattgttaggtccacctccatttt |
5379070 |
T |
|
| Q |
119 |
gagaaggcaagcaattacgataggcttgatttgtaggacacttaacagcagcaccattgctgttaccatgtctacctgtttgtgtttgactcaaatccaa |
218 |
Q |
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|||||||||||||| |||||||| ||||| | | ||||||| ||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||| |
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| T |
5379071 |
gagaaggcaagcaagtacgatagccttgaactattggacactaaacagcaacaccattgttgttaccagttctaccagtttgtgtttgactcaaatccaa |
5379170 |
T |
|
| Q |
219 |
aagcattcttgctgcatgagaactcatagaaaattcttctgattccaaatcattgttgatgagacaatcctctgaggtacaacccttaatcttcaatgat |
318 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5379171 |
aagcattcttgctgcatgagaatgcatagaaaattcttccgattccaaatcattgttgatgagacaatcctctgaggtacaaccctttatcttcaatgaa |
5379270 |
T |
|
| Q |
319 |
gttgttttggatagatgtaattg |
341 |
Q |
| |
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||||||||| |||||||||||| |
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|
| T |
5379271 |
gttgttttgcttagatgtaattg |
5379293 |
T |
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