View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_low_19 (Length: 278)
Name: NF4073_low_19
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_low_19 |
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| [»] chr2 (5 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 21434931 - 21434671
Alignment:
| Q |
18 |
gaaagaatgacataacattatcagaatatcaaactaggatgacaagttaacttatatttccatcaacaaaaatacaaaatgcacgaactagaagaaagat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21434931 |
gaaagaatgacataacattatcagaatatcaaactaggatgacaagttaactgatatttccgtcaacaaaaatacaaaatgcacgaactagaagaaagat |
21434832 |
T |
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| Q |
118 |
aaatatcaaaacgataactaactacctgcctcacatctcgatcgacaagatctccttgaagttcctacaaaaccccaccatacagttttagcaatatatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21434831 |
aaatatcaaaacgataactaactacctgcctcacatctcgatcgacaagatctccttgaagttcctacaaaaccccaccatacagttttagcaatatgtc |
21434732 |
T |
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| Q |
218 |
aaatacaacaaacattttatcagcaacatatgagacatacatcgaagaatttggagttgat |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434731 |
aaatacaacaaacattttatcagcaacatatgagacatacatcgaagaatttggagttgat |
21434671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 278
Target Start/End: Complemental strand, 26990744 - 26990504
Alignment:
| Q |
27 |
acataacattatcagaatatcaaactaggatgacaagttaacttatatttccatcaacaaaaatacaaaatgcacgaactagaagaaagataaatatcaa |
126 |
Q |
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|||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| |||| ||| |
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| T |
26990744 |
acataacattatcagaatatgacactaggatgacaaattaacttatatttccatcagcaaaa--------tgcacgaaccagaagaaagatgaataacaa |
26990653 |
T |
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| Q |
127 |
aacgataactaactacctgcctcacatctcgatcgacaagatctccttgaagttcctacaaaaccccaccatacagttttagcaatatatcaaatacaac |
226 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||| |
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| T |
26990652 |
---gataactaactacctgcctcacatctcgatcaacaagatctccttgaagttcctacaaatccccacaacacagttttagcaacatatcaaatacaac |
26990556 |
T |
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| Q |
227 |
aaacattttatcagcaacatatgagacatacatcgaagaatttggagttgat |
278 |
Q |
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||| |||||||| |||| ||| |||||||||||||||||||| ||||||| |
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| T |
26990555 |
aaattttttatcaacaacttatctgacatacatcgaagaatttgtagttgat |
26990504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 278
Target Start/End: Original strand, 27074188 - 27074428
Alignment:
| Q |
27 |
acataacattatcagaatatcaaactaggatgacaagttaacttatatttccatcaacaaaaatacaaaatgcacgaactagaagaaagataaatatcaa |
126 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||| ||||| ||| ||||||||||| |||| | |
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| T |
27074188 |
acataacattatcagaatatgacactaggatgacaaattaacttatatttccatcagcaaaa--------tgcacaaaccagaagaaagatgaata---a |
27074276 |
T |
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| Q |
127 |
aacgataactaactacctgcctcacatctcgatcgacaagatctccttgaagttcctacaaaaccccaccatacagttttagcaatatatcaaatacaac |
226 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||| |
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| T |
27074277 |
aaagataactaactacctgcctcacatctcgatcaacaagatctccttgaagttcctacaaatccccacaacacagttttagcaacatatcaaatacaac |
27074376 |
T |
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| Q |
227 |
aaacattttatcagcaacatatgagacatacatcgaagaatttggagttgat |
278 |
Q |
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||| |||||||| |||| ||| ||||||||||||||||||||| ||||||| |
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| T |
27074377 |
aaattttttatcaacaacttatcagacatacatcgaagaatttgtagttgat |
27074428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 27 - 278
Target Start/End: Complemental strand, 27029630 - 27029386
Alignment:
| Q |
27 |
acataacattatcagaatatcaaactaggatgacaagttaacttatatttccatcaacaaaaatacaaaatgcacgaactagaagaaagataaatatcaa |
126 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||| ||||||||||| | || || || |||||||||||||| ||||||||||| |||| ||| |
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| T |
27029630 |
acataacattatcagaatatgacactaggatgacaaattaacttatatat--attttcatcaa--caaaatgcacgaaccagaagaaagatgaataacaa |
27029535 |
T |
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| Q |
127 |
aacgataactaactacctgcctcacatctcgatcgacaagatctccttgaagttcctacaaaaccccaccatacagttttagcaatatatcaaatacaac |
226 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||| |
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| T |
27029534 |
---gataactaactacctgcctcacatctcgatcaacaagatctccttgaagttcctacaaattcccactacacagttttagcaacatatcaaatacaac |
27029438 |
T |
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| Q |
227 |
aaacattttatcagcaacatatgagacatacatcgaagaatttggagttgat |
278 |
Q |
| |
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||| |||||||| |||| ||| |||||||||||||||||||| ||||||| |
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| T |
27029437 |
aaattttttatcaacaacttatctgacatacatcgaagaatttgtagttgat |
27029386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 92 - 270
Target Start/End: Complemental strand, 27153610 - 27153432
Alignment:
| Q |
92 |
caaaatgcacgaactagaagaaagataaatatcaaaacgataactaactacctgcctcacatctcgatcgacaagatctccttgaagttcctacaaaacc |
191 |
Q |
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||||||||| |||||||||||||||||| |||||| | |||||||| ||| |||||||| ||| |||||||||| ||||||||||||||| ||||| | |
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| T |
27153610 |
caaaatgcatgaactagaagaaagataactatcaacaagataactagctatctgcctcatgtcttgatcgacaaggtctccttgaagttccaacaaattc |
27153511 |
T |
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| Q |
192 |
ccaccatacagttttagcaatatatcaaatacaacaaacattttatcagcaacatatgagacatacatcgaagaatttg |
270 |
Q |
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|||||| ||||||||||||||||||||||||||||| || |||||||||| || ||||||| ||||||||||||||||| |
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| T |
27153510 |
ccaccacacagttttagcaatatatcaaatacaacagactttttatcagcgacgtatgagatatacatcgaagaatttg |
27153432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 278
Target Start/End: Complemental strand, 34693001 - 34692761
Alignment:
| Q |
27 |
acataacattatcagaatatcaaactaggatgacaagttaacttatatttccatcaacaaaaatacaaaatgcacgaactagaagaaagataaatatcaa |
126 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| |||| | |
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| T |
34693001 |
acataacattatcagaatatgacactaggatgacaaattaacttatatttccatcagcaaaa--------tgcacgaaccagaagaaagatgaata---a |
34692913 |
T |
|
| Q |
127 |
aacgataactaactacctgcctcacatctcgatcgacaagatctccttgaagttcctacaaaaccccaccatacagttttagcaatatatcaaatacaac |
226 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||| |
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| T |
34692912 |
aaagataactaactacctgcctcacatctcgatcaacaagatctccttgaagttcctacaaatccccacaacacagttttagcaacatatcaaatacaac |
34692813 |
T |
|
| Q |
227 |
aaacattttatcagcaacatatgagacatacatcgaagaatttggagttgat |
278 |
Q |
| |
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||| |||||||| |||| ||| |||||||||||||||||||| ||||||| |
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| T |
34692812 |
aaattttttatcaacaacttatctgacatacatcgaagaatttgtagttgat |
34692761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 50172008 - 50172059
Alignment:
| Q |
136 |
taactacctgcctcacatctcgatcgacaagatctccttgaagttcctacaa |
187 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
50172008 |
taactacctgcctcacatctcgatcaacaagatctccttgaagtttctacaa |
50172059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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