View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_low_2 (Length: 728)
Name: NF4073_low_2
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 43382004 - 43382380
Alignment:
| Q |
20 |
ggcacatgttatacatgccttcaattaggattgttggtgctacagagctgtcagatcatgaataaggacataaggtagcaaaactaaaactgcggtgaat |
119 |
Q |
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| T |
43382004 |
ggcacatgttatacatgccttcaattaggattgttggtgctacagagctgtcagatcatgaataaggacataaggtagcaaaactaaaactgtggtgaat |
43382103 |
T |
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| Q |
120 |
cacatatgtaggagggcattttattagaaccacattacaaaaatgatacgcatttaattgtattctctttagcctgatttgtatgctaagattatgtaca |
219 |
Q |
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| T |
43382104 |
cacatatgtaggagggcattttattagaaccacattacaaaaatgatacgcatttaattgtattctctttagcctgatttgtatgctaagattatgtaca |
43382203 |
T |
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| Q |
220 |
aattaacaatttatatgtacttgtttgcatgtgcgcgggtggtcgtactgtctatttatgcatacagatagcacacggatactattcgcatgcgtatttg |
319 |
Q |
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| T |
43382204 |
aatcaacaatttatatgtacttgtttgcatgtgcgcgggtggtcgtactgtctatttatgcatacagatagcacacggatactattcgcatgcctatttg |
43382303 |
T |
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| Q |
320 |
tgtatgcatggatgtatatattatcatattagttaatgtctactgggtaaacttcttcaggaattcttcttctggca |
396 |
Q |
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| T |
43382304 |
tgtatgcatggatgtatatattatcatactagttaatgtctactgggtaaacttcttcaggaattctttttctggca |
43382380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 572 - 719
Target Start/End: Original strand, 43382839 - 43382986
Alignment:
| Q |
572 |
atgatggatttctgattccttctctttattctcacaattccttttctaaaatccatgttacagagatttcattcatgtaactataagctttatatttact |
671 |
Q |
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| T |
43382839 |
atgatggatttctgattccttctctttattctcacaattccttttctaaaatccatgttacagagatttcattcatgtaactataagctttatatttact |
43382938 |
T |
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| Q |
672 |
acaaacaaagtacaacccttccatacacatgatatatcaagtctgtgc |
719 |
Q |
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| T |
43382939 |
acaaacaaagtacaacccttccatacacatgatataccaagtctgtgc |
43382986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 346 - 482
Target Start/End: Original strand, 43382613 - 43382749
Alignment:
| Q |
346 |
tattagttaatgtctactgggtaaacttcttcaggaattcttcttctggcagaggtgcttactcgtattaactcaatatctctagacagtaaaactatac |
445 |
Q |
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| T |
43382613 |
tattagtgaatgtctactggataaacttcttcaggaattcttcttctggcagaggtgcttactcgtattaactcaatatctctagacagtaaaactatac |
43382712 |
T |
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| Q |
446 |
atagcttggttgggttcttcaaggaaagaatggtcag |
482 |
Q |
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| T |
43382713 |
atagcttggttgggttcttcaaggaaagaatggtcag |
43382749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 354 - 482
Target Start/End: Original strand, 37150972 - 37151100
Alignment:
| Q |
354 |
aatgtctactgggtaaacttcttcaggaattcttcttctggcagaggtgcttactcgtattaactcaatatctctagacagtaaaactatacatagcttg |
453 |
Q |
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| T |
37150972 |
aatgtctactggataaatttcttcaggaattcttcttctggcggaggtgcttactcgcatcaattcaatatctcttgacagtaaaactatacatagcttg |
37151071 |
T |
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| Q |
454 |
gttgggttcttcaaggaaagaatggtcag |
482 |
Q |
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| T |
37151072 |
gttgggttcttcaaggaaagactggtcag |
37151100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 37150777 - 37150843
Alignment:
| Q |
176 |
attgtattctctttagcctgatttgtatgctaagattatgtacaaattaacaatttatatgtacttgt |
243 |
Q |
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| T |
37150777 |
attggattctctttagcctgatttgtatgctaa-agtttgtactagttgataatttatatgtacttgt |
37150843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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