View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_low_27 (Length: 225)
Name: NF4073_low_27
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_low_27 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: scaffold0256 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 11255 - 11365
Alignment:
| Q |
4 |
ttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccagtagc |
103 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
11255 |
ttttttgtcactgatctcgagcaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacattggctgcaatattgggaacttccagtagc |
11354 |
T |
|
| Q |
104 |
atagtagatac |
114 |
Q |
| |
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|||| |||||| |
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|
| T |
11355 |
atagcagatac |
11365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 16572482 - 16572377
Alignment:
| Q |
1 |
atgttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccagt |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||| ||||||||||||||| ||||| | ||||||| | ||||||||||||| |||||||| | |
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| T |
16572482 |
atgttttttgtcactgatctcgagcaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaatattggctgcaatattgaaaacttccaat |
16572383 |
T |
|
| Q |
101 |
agcata |
106 |
Q |
| |
|
|||||| |
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|
| T |
16572382 |
agcata |
16572377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 16580468 - 16580363
Alignment:
| Q |
1 |
atgttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccagt |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||| ||||||||||||||| ||||| | ||||||||| | ||||||||||| |||||||| | |
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| T |
16580468 |
atgttttttgtcactgatctcgagcaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaacattagctgcaatattgaaaacttccaat |
16580369 |
T |
|
| Q |
101 |
agcata |
106 |
Q |
| |
|
|||||| |
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|
| T |
16580368 |
agcata |
16580363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 16614912 - 16615017
Alignment:
| Q |
1 |
atgttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccagt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||| ||||||||||||||| ||||| | ||||||||| | ||||||||||| |||||||| | |
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|
| T |
16614912 |
atgttttttgtcactgatctcgagcaagcgactgaaattcttactgatgatcttacgcttcacgtcatgaacattagctgcaatattgaaaacttccaat |
16615011 |
T |
|
| Q |
101 |
agcata |
106 |
Q |
| |
|
|||||| |
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|
| T |
16615012 |
agcata |
16615017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 16874328 - 16874223
Alignment:
| Q |
1 |
atgttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccagt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||| ||||||||||||||| ||||| | ||| ||||| ||||||||||||| |||||||| | |
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|
| T |
16874328 |
atgttttttgtcactgatctcgagcaagtggctgaaattcttactgatgatcttacgcttcacgtcaggaacattggctgcaatattgaaaacttccaat |
16874229 |
T |
|
| Q |
101 |
agcata |
106 |
Q |
| |
|
|||||| |
|
|
| T |
16874228 |
agcata |
16874223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 16691581 - 16691639
Alignment:
| Q |
4 |
ttttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcg |
62 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||| |
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|
| T |
16691581 |
ttttttgtcaccgatctcgagcaagcgatggaaattcttactgatgatcttatgcttcg |
16691639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 16977557 - 16977658
Alignment:
| Q |
11 |
tcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccagtagcatagtag |
110 |
Q |
| |
|
||||||||||||| ||||| | ||||||| || ||||||||||||||||||| || |||||| |||||||| || | ||||||| || |||||||| || |
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|
| T |
16977557 |
tcactgatctcgaaaaagcaatggaaattcgtattgatgatcttatgcttcgcgtcttgaacattggctgcatta-tgggaacttgcattagcatagaag |
16977655 |
T |
|
| Q |
111 |
ata |
113 |
Q |
| |
|
||| |
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|
| T |
16977656 |
ata |
16977658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 21629220 - 21629113
Alignment:
| Q |
6 |
ttttgtcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccagtagcat |
105 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||| ||||||||||||||| |||||| ||||||| | ||||||| ||||| |||||||||| || ||| |
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| T |
21629220 |
ttttgtcacttatctcgagcaagcgatggaaattcttactgatgatcttacgcttcgtgtcatgaatattggctgccatattgggaacttccaataccat |
21629121 |
T |
|
| Q |
106 |
agtagata |
113 |
Q |
| |
|
|| ||||| |
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|
| T |
21629120 |
agcagata |
21629113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 233738 - 233839
Alignment:
| Q |
11 |
tcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccagtagcatagtag |
110 |
Q |
| |
|
||||||| ||| || ||||| ||||||| ||||||||||||||| |||| |||||||||||| ||||||| || || ||||||||||| ||||||| || |
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|
| T |
233738 |
tcactgacctcaagcaagcggcggaaattcttactgatgatcttacgcttagcatcatgaacattggctgccatgtttggaacttccagcagcatagcag |
233837 |
T |
|
| Q |
111 |
at |
112 |
Q |
| |
|
|| |
|
|
| T |
233838 |
at |
233839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 48298854 - 48298955
Alignment:
| Q |
11 |
tcactgatctcgagaaagcgaaggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccagtagcatagtag |
110 |
Q |
| |
|
||||||| ||| || ||||| ||||||| ||||||||||||||| |||| |||||||||||| ||||||| || || ||||||||||| ||||||| || |
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|
| T |
48298854 |
tcactgacctcaagcaagcggcggaaattcttactgatgatcttacgcttagcatcatgaacattggctgccatgttgggaacttccagcagcatagcag |
48298953 |
T |
|
| Q |
111 |
at |
112 |
Q |
| |
|
|| |
|
|
| T |
48298954 |
at |
48298955 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 7391735 - 7391656
Alignment:
| Q |
33 |
ggaaattgttactgatgatcttatgcttcgcatcatgaacactggctgcaatattcggaacttccagtagcatagtagat |
112 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||||| ||||||| || || ||||||||||| ||||||| |||| |
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|
| T |
7391735 |
ggaaattcttactgatgatcttacgctttgcatcatgaacattggctgccatgttgggaacttccagcagcatagcagat |
7391656 |
T |
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