View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_low_28 (Length: 221)
Name: NF4073_low_28
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 37085030 - 37084829
Alignment:
| Q |
4 |
gaaaggtcaagagatccaattatgcaatacgattctacaatgctgcaggtatgaaaaagtttatcgtccatactatggtcttctgggggagcgtttttgt |
103 |
Q |
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| T |
37085030 |
gaaaggtcaagagatccaattatgcaatatgattctacaatgctgcaggtatgaaaaagtttatcgtccatactatggtcttctgggggagcgtttttgt |
37084931 |
T |
|
| Q |
104 |
atgatcaacaaagtttatcaacaaaactttgaaaagtgttttgctcaacaattgtcaacaattcacaggcttcaaacaaatcaactccgaaatgtggcac |
203 |
Q |
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| T |
37084930 |
atgatcaacaaagtttatcaacaaaactttgaaaagtgttttgctcaacagttgtcaacaattcacaggcttcaaacaaatcaactccgaaatgtggcac |
37084831 |
T |
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| Q |
204 |
ag |
205 |
Q |
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|| |
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| T |
37084830 |
ag |
37084829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 37184250 - 37184451
Alignment:
| Q |
4 |
gaaaggtcaagagatccaattatgcaatacgattctacaatgctgcaggtatgaaaaagtttatcgtccatactatggtcttctgggggagcgtttttgt |
103 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37184250 |
gaaaggtcaagagatccaattatgcaatatgattctacaatgctgcaggtatgaaaaagtttatcgtccatactatggtcttctgggggagcgtttttgt |
37184349 |
T |
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| Q |
104 |
atgatcaacaaagtttatcaacaaaactttgaaaagtgttttgctcaacaattgtcaacaattcacaggcttcaaacaaatcaactccgaaatgtggcac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37184350 |
atgatcaacaaagtttatcaacaaaactttgaaaagtgttttgctcaacagttgtcaacaattcacaggcttcaaacaaatcaactccgaaatgtggcac |
37184449 |
T |
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| Q |
204 |
ag |
205 |
Q |
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|| |
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| T |
37184450 |
ag |
37184451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 14712580 - 14712516
Alignment:
| Q |
82 |
tcttctgggggagcgtttttgtatgatcaacaaagtttatcaacaaaactttgaaaagtgttttg |
146 |
Q |
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|||||| ||| ||||||||||||||||||||||||| ||||| |||| ||||| |||||||||| |
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| T |
14712580 |
tcttcttgggtagcgtttttgtatgatcaacaaagtgcatcaagaaaattttgagaagtgttttg |
14712516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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