View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_low_4 (Length: 590)
Name: NF4073_low_4
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 21 - 409
Target Start/End: Original strand, 43709868 - 43710256
Alignment:
| Q |
21 |
atgtccaccactaatatgactaccatatgttatggagttagataatagtgaagccattaagttaccggtccgattcatttcattctcatatcttgaattg |
120 |
Q |
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| T |
43709868 |
atgtccaccactaatatgactaccatatgttatggagttagataatagtgaagccattaagttaccggtccgattcatttcattctcatatcttgaattg |
43709967 |
T |
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| Q |
121 |
tgaacataaacctcagcaccaacaatacaactatcgttcacaataaaccccaggcgatgattatgaagctcaactaaaggcatgaaagatgtgaaacccc |
220 |
Q |
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| T |
43709968 |
tgaacataaacctcagcaccaacaatacaactatcgttcacaataaaccccaggcgatgattatgaagctcaactaaaggcatgaaagatgtgaaacccc |
43710067 |
T |
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| Q |
221 |
agtctctctccctttcactgaacacatgatgagtctctgtcaagttcatatatgaagagttaatttggctgactttagtgaaaaatgaaatcatgcaatt |
320 |
Q |
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| T |
43710068 |
agtctctctccctttcactgaacacatgatgagtctctgtcaagttcatatatgaagagttaatttggctgactttagtgaaaaatgaaatcatgcaatt |
43710167 |
T |
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| Q |
321 |
ttataaataaaatatctaaaactcaatcaaaacaagacctctgtattacgttgggaggaaacaaaagttccaccccttgtttaacccgt |
409 |
Q |
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| T |
43710168 |
ttataaataaaatatctaaaactcaatcaaaacaagacctctgtattacgttgggaggaaacaaaagttccaccccttgtttaacccgt |
43710256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 455 - 578
Target Start/End: Original strand, 43710302 - 43710425
Alignment:
| Q |
455 |
cattaggagaataaggggcatacactgtgagtgtaaattaattttacacttacatcccatgaaagtccattatattgcgccactacagaccattgattta |
554 |
Q |
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| T |
43710302 |
cattaggagaataaggggcatacactttgagtgtaaattaattttacacttacatcccatgaaagtccattatattgcgccactacagaccattgattta |
43710401 |
T |
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| Q |
555 |
agattaagttacaagattcagtcc |
578 |
Q |
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| T |
43710402 |
agattaagttacaagattcagtcc |
43710425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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