View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4073_low_5 (Length: 586)
Name: NF4073_low_5
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 21 - 576
Target Start/End: Complemental strand, 30408995 - 30408438
Alignment:
| Q |
21 |
gtcgccgaggatcagtaccttctagtgatgagatatcagaaaatgctgaagccaatgaaacatgtgatagagttgatgctgattcggtatggggaaacat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408995 |
gtcgccgaggatcagtaccttctagtgatgagatatcagaaaatgctgaagccaatgaaacatgtgatagagttgatgctgattcggtatggggaaacat |
30408896 |
T |
|
| Q |
121 |
tcagtcatgggggaaagatgcaaaacacaatctggaacggaagcctgatggtcaagaaaggacatccccgccttctggtgtgaccgagctttcggatcct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30408895 |
tcagtcatgggggaaagatgcaaaacacaatccggaacggaagcctgatggtcaagaaaggacatccccgccttctggtgtgaccgagctttcagatcct |
30408796 |
T |
|
| Q |
221 |
atgaagagagctagatctcaaggtatgtttgaatcggacaacgctccggagcattcttcagcacttggtaatcatgatggtgataaagatggagccactc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408795 |
atgaagagagctagatctcaaggtatgtttgaatcggacaacgctccggagcattcttcagcacttggtaatcatgatggtgataaagatggagccactc |
30408696 |
T |
|
| Q |
321 |
aagcagtcctatcacctgaaaacaatcctgaagatgccgactcagaatcgaaaagaaggtactgtactttatctgctactgtcttcatgctggcattggc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408695 |
aagcagtcctatcacctgaaaacaatcctgaagatgccgattcagaatcgaaaagaaggtactgtactttatctgctactgtcttcatgctggcattggc |
30408596 |
T |
|
| Q |
421 |
aatacaaata--gagacagtctatgtatgttgttggtttaattttctgttgcaggaagaaggagagctacccggttgaaacaatggtgcctccgagggct |
518 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408595 |
aatacaaatagagagacagtctatgtatgttgttggtttaattttctgttgcaggaagaaggagagctacccggttgaaacaatggtgcctccgagggct |
30408496 |
T |
|
| Q |
519 |
gttcgtgagccacgagtggtagtccaaattgagagtgagatcgacatacttgatgatg |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30408495 |
gttcgtgagccacgagtggtagtccaaattgagagtgacatcgacatacttgatgatg |
30408438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 111 - 576
Target Start/End: Complemental strand, 30395271 - 30394822
Alignment:
| Q |
111 |
ggggaaacattcagtcatgggggaaagatgcaaaacacaatctggaacggaagcctgatggtcaagaaaggacatccccgccttctggtgtgaccgagct |
210 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| ||| |||| ||| |
|
|
| T |
30395271 |
ggggaaacattcagtcgcgaggaaaagatgcaaaacacaatccggaatggaagcctgatggtcaagaaaggacatcccaaccttctgatgtcaccgggct |
30395172 |
T |
|
| Q |
211 |
ttcggatcctatgaagagagctagatctcaaggtatgtttgaatcggacaacgctccggagcattcttcagcacttggtaatcatgatggtgataaagat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
30395171 |
ttcggatcctatgaagagagctagatctcaaggtatgtttgaatcagacgacgctcaggagcattcttccgcacttgataatcatgatggtgataaagat |
30395072 |
T |
|
| Q |
311 |
ggagccactcaagcagtcctatcacctgaaaacaatcctgaagatgccgactcagaatcgaaaagaaggtactgtactttatctgctactgtcttcatgc |
410 |
Q |
| |
|
|||||||||| ||||||||||| | || ||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| |
|
|
| T |
30395071 |
ggagccactc---------------ctgaaaacaattccga---tgccgactcagaatcgaaaagaaggtattgtattttatctgatactgtcttcatgt |
30394990 |
T |
|
| Q |
411 |
tggcattggcaatacaaataga--gacagtctatgtatgttgttggtttaattttctgttgcaggaagaaggagagctacccggttgaaacaatggtgcc |
508 |
Q |
| |
|
| |||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30394989 |
tagcattggcaatacaaatagaaagacaatctatatacgttgttggtttaattttctgttgcaggaagaaggagagctacccggttgaaacaatgctgcc |
30394890 |
T |
|
| Q |
509 |
tccgagggctgttcgtgagccacgagtggtagtccaaattgagagtgagatcgacatacttgatgatg |
576 |
Q |
| |
|
|| |||||||||||||| |||||||||| ||||||||| ||||||||| || || |||||||||||| |
|
|
| T |
30394889 |
tcggagggctgttcgtgcgccacgagtgatagtccaaagtgagagtgacattgatgtacttgatgatg |
30394822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 30395334 - 30395273
Alignment:
| Q |
21 |
gtcgccgaggatcagtaccttctagtgatgagatatcagaaaatgctgaagccaatgaaaca |
82 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
30395334 |
gtcgtcgaggatcagtaccttctagtgatgaaatgtcagaaaatgctgaagccaatgaaaca |
30395273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University