View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_low_6 (Length: 568)
Name: NF4073_low_6
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 21 - 553
Target Start/End: Original strand, 28024174 - 28024706
Alignment:
| Q |
21 |
tagtttcaagaatagagttaataaaacaaactcatttgaaaggtatacctaaaattgaaattatgccaaaattgaaatatagttgaacttattcnnnnnn |
120 |
Q |
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| T |
28024174 |
tagtttcaagaatagagttaataaaacaaactcatttgaaaggtatacctaagattgaaattatgccaaaattgaaatacagttgaacttattcttttgt |
28024273 |
T |
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| Q |
121 |
ngatatcaaacctaaaatgcagtttatttttaataattattatgtatctcatctaattttaaaaacaatacaaaacattgcagacatgcaacacataacc |
220 |
Q |
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| T |
28024274 |
tgatatcaaacataaaatgcagtttatttttaataattattatgtatctcatctaattttaaaaacaatacaaaacattgcagacatgcaacacataacc |
28024373 |
T |
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| Q |
221 |
ttataacaaaatgaaagatagagttaaaatgagtgtcatttgctatgatcaagttccacaagagatgtcaatatagaattcagattgcaccgtctttgtt |
320 |
Q |
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| T |
28024374 |
ttataacaaaatgaaagataaagttaaaatgattgtcatttgctgtgatcaagttccacaagagatgtcaatatagaattcagattgcaccgtctttgtt |
28024473 |
T |
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| Q |
321 |
caactttacgctaacaaacgctttcgtatctgcaagtgcaaaaataagttttgatcaataataattaactttttcactaacaattaaggtaaaacttgag |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28024474 |
caactttacgctaacaaacgctttcgtatctgcaagtgcaaaaataagttttgatcaataataattaactttttcactaacaattaaggtaaaacttgag |
28024573 |
T |
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| Q |
421 |
attctgattgaaatcaatgtaatgagtgtaaggtaatgaacatgcctcgggcaacttttgtcgaaaaatgacatcaagtcgcgcgtcaagagtattttcc |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28024574 |
attctgattgaaatcaatgtaatgagtgtaaggtaatgaacatgcctcgggcaacttttgtcgaaaaatgacatcaagtcgcgcgtcaagagtattttcc |
28024673 |
T |
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| Q |
521 |
aacactatctttccatcctctgaggccaatact |
553 |
Q |
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| T |
28024674 |
aacactatctttccatcctctgaggccaatact |
28024706 |
T |
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