View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4073_low_7 (Length: 490)

Name: NF4073_low_7
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4073_low_7
NF4073_low_7
[»] chr2 (4 HSPs)
chr2 (236-482)||(36611894-36612140)
chr2 (1-171)||(36612205-36612375)
chr2 (430-470)||(44605152-44605191)
chr2 (434-470)||(19613630-19613665)
[»] chr4 (4 HSPs)
chr4 (65-159)||(18641035-18641129)
chr4 (240-314)||(18641263-18641337)
chr4 (432-470)||(19230324-19230361)
chr4 (430-468)||(44796975-44797012)
[»] chr1 (1 HSPs)
chr1 (444-475)||(39101208-39101239)
[»] chr8 (3 HSPs)
chr8 (351-401)||(34200980-34201030)
chr8 (434-470)||(3508059-3508094)
chr8 (434-470)||(37225760-37225795)
[»] chr6 (1 HSPs)
chr6 (434-475)||(13689210-13689250)
[»] chr5 (1 HSPs)
chr5 (434-470)||(18607114-18607149)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 236 - 482
Target Start/End: Complemental strand, 36612140 - 36611894
Alignment:
Q  236 gttgttgtagatatgtgttgaagaaaattaggcttgcaaggcaaacggaacggtgtagaagatctgctcatcaagaggtagtaattggattttgttttgg 335  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36612140 gttgttgtagatatgtgttgaagaaaattaggcttgctaggcaaacggaacggtgtagaagatctgctcatcaagaggtagtaattggattttgttttgt 36612041  T
Q  336 tagtttcttgcatactatcacttacacttctgatcaaatgtgtattcggtgtctgacacgtgtcagcgatgtgatgtgtttgtctatgacaccgtgtaat 435  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||    
T  36612040 tagtttcttgcttactatcacttacacttctaatcaaatgtgtattcggtgtctgacacgtgtcggtgatgtgatgtgtttgtctatgacactgtgtaat 36611941  T
Q  436 tacattgaaattatgttattttctcaaattattatatgtgatgatgt 482  Q
    || ||||||||||||||||||||||||||||||||||||||||||||    
T  36611940 tatattgaaattatgttattttctcaaattattatatgtgatgatgt 36611894  T

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Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 36612375 - 36612205
Alignment:
Q  1 ttgaaatttcgttgaaattcaaattgcgtttgatatctacattttcgtgttttgcattggtgtttaagatggatcagtatgagatcatggagcagatcgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36612375 ttgaaatttcgttgaaattcaaattgcgtttgatatctacattttcgtgttttgcattggtgtttaagatggatcagtatgagatcatggagcagatcgg 36612276  T
Q  101 tcgcggtgcatttggtgctgcaattctcgttaatcacaaggtggagaagaaaaggtaatgtgttcgcgcca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36612275 tcgcggtgcatttggtgctgcaattctcgttaatcacaaggtggagaagaaaaggtaatgtgttcgcgcca 36612205  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 470
Target Start/End: Original strand, 44605152 - 44605191
Alignment:
Q  430 tgtaattacattgaaattatgttattttctcaaattattat 470  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  44605152 tgtaattacattgaa-ttatgttattttctcaaattattat 44605191  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 470
Target Start/End: Original strand, 19613630 - 19613665
Alignment:
Q  434 attacattgaaattatgttattttctcaaattattat 470  Q
    ||||||||||| |||||||||||||||||||||||||    
T  19613630 attacattgaa-ttatgttattttctcaaattattat 19613665  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 18641035 - 18641129
Alignment:
Q  65 taagatggatcagtatgagatcatggagcagatcggtcgcggtgcatttggtgctgcaattctcgttaatcacaaggtggagaagaaaaggtaat 159  Q
    ||||||||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||| |||||||| || |  |||||||||| |||||    
T  18641035 taagatggatcagtatgagatcatggaacagatcggtcgtggagcttttggtgctgctattcttgttaatcataaagctgagaagaaaaagtaat 18641129  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 18641263 - 18641337
Alignment:
Q  240 ttgtagatatgtgttgaagaaaattaggcttgcaaggcaaacggaacggtgtagaagatctgctcatcaagaggt 314  Q
    |||||| ||||||||||| ||||| |||||||| || || || ||| | || |||||||||||||||||||||||    
T  18641263 ttgtaggtatgtgttgaaaaaaatcaggcttgctagacagactgaaagatgcagaagatctgctcatcaagaggt 18641337  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 470
Target Start/End: Original strand, 19230324 - 19230361
Alignment:
Q  432 taattacattgaaattatgttattttctcaaattattat 470  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  19230324 taattacattgaa-ttatgttattttctcaaattattat 19230361  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 468
Target Start/End: Original strand, 44796975 - 44797012
Alignment:
Q  430 tgtaattacattgaaattatgttattttctcaaattatt 468  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  44796975 tgtaattacattgaa-ttatgttattttctcaaattatt 44797012  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 475
Target Start/End: Original strand, 39101208 - 39101239
Alignment:
Q  444 aattatgttattttctcaaattattatatgtg 475  Q
    ||||||||||||||||||||||||||||||||    
T  39101208 aattatgttattttctcaaattattatatgtg 39101239  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 34200980 - 34201030
Alignment:
Q  351 tatcacttacacttctgatcaaatgtgtattcggtgtctgacacgtgtcag 401  Q
    ||||||| | |||||||||||||  ||| ||||||||||||||||||||||    
T  34200980 tatcactgatacttctgatcaaagatgtgttcggtgtctgacacgtgtcag 34201030  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 470
Target Start/End: Complemental strand, 3508094 - 3508059
Alignment:
Q  434 attacattgaaattatgttattttctcaaattattat 470  Q
    ||||||||||| |||||||||||||||||||||||||    
T  3508094 attacattgaa-ttatgttattttctcaaattattat 3508059  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 470
Target Start/End: Original strand, 37225760 - 37225795
Alignment:
Q  434 attacattgaaattatgttattttctcaaattattat 470  Q
    ||||||||||| |||||||||||||||||||||||||    
T  37225760 attacattgaa-ttatgttattttctcaaattattat 37225795  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 475
Target Start/End: Original strand, 13689210 - 13689250
Alignment:
Q  434 attacattgaaattatgttattttctcaaattattatatgtg 475  Q
    |||||||||||||| |||||||||||||||||||||| ||||    
T  13689210 attacattgaaatt-tgttattttctcaaattattatctgtg 13689250  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 470
Target Start/End: Original strand, 18607114 - 18607149
Alignment:
Q  434 attacattgaaattatgttattttctcaaattattat 470  Q
    ||||||||||| |||||||||||||||||||||||||    
T  18607114 attacattgaa-ttatgttattttctcaaattattat 18607149  T

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