View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4073_low_8 (Length: 410)
Name: NF4073_low_8
Description: NF4073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4073_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 45689934 - 45690310
Alignment:
| Q |
10 |
catcatcatcgtcgttggcagcggggctgtgagggtgagtgctgctagcaatggtgacggtgaggagaccattggaggatgaggatgaaccatgagatgt |
109 |
Q |
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| T |
45689934 |
catcgtcatcgtcgttggcagcggggccgtgagggtgagtgctgctagcaatggtgacggtgaggagaccattggaggatgaggatgaaccatgagatgt |
45690033 |
T |
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| Q |
110 |
ggaacctgtagtagtcttcatgttttgcatgctattgctcatcttcctcttcttcttattcgcatgcaaatttcttaaattctagttagtaattaatcaa |
209 |
Q |
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| T |
45690034 |
ggaacctgtagtagtcttcatgttttgcatgctattgctcatcttcctcttcttcttattcgcatgcaaatttcttaaattctagttagtaattaatcaa |
45690133 |
T |
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| Q |
210 |
tcggaatcatcacaactccctcccattctcaatgcctattgttggcaaatactattattaattaattaactgcttagatggaatgttaatacattctctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45690134 |
tcggaatcatcacaactccctcccattctcaatgcctattgttggcaaatactattattaattaattaactgcttagatggaatgttaatacattctctt |
45690233 |
T |
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| Q |
310 |
tctttctccaaaaatagatagccatcccgaacaaaacaacaccatctatctatcta----tctacattttatttatt |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45690234 |
tctttctccaaaaatagatagccatcccgaacaaaacaacaccatctatctatctatctgtctacattttatttatt |
45690310 |
T |
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