View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4074_high_1 (Length: 701)
Name: NF4074_high_1
Description: NF4074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4074_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 28111434 - 28110915
Alignment:
| Q |
1 |
accaccagattctgctctttcctgtgtgttgtgtcatggggtcccggaggtgtcggatcatctctttctcaattgtgttacggcaacagcagtctggacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28111434 |
accaccagattctgctctttcctgtgtgttgtgtcatggggtcccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggacc |
28111335 |
T |
|
| Q |
101 |
aagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111334 |
aagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcaga |
28111235 |
T |
|
| Q |
201 |
aggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggt |
300 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111234 |
aggggtatcggataatccggcacgcagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggt |
28111135 |
T |
|
| Q |
301 |
ggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111134 |
ggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttg |
28111035 |
T |
|
| Q |
401 |
gtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111034 |
gtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattg |
28110935 |
T |
|
| Q |
501 |
ctgtcctgcttctttgcacc |
520 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28110934 |
ctgtcctgcttctttgcacc |
28110915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 521 - 690
Target Start/End: Complemental strand, 40383213 - 40383045
Alignment:
| Q |
521 |
agacggagagagtatttgatacatttatatattcnnnnnnntaaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40383213 |
agacggagagagtatttgatacatttatatattcaaaaaaataaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
40383114 |
T |
|
| Q |
621 |
caaagatgcttcctatattagtgataacttgaattattaaaccataaacagacgatactccctatgctac |
690 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
40383113 |
-aaagatgcttcctatgttagtgataacttgaattattaaactataaacagatgatactccctatgctac |
40383045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 41 - 387
Target Start/End: Complemental strand, 33131705 - 33131359
Alignment:
| Q |
41 |
gtcccggaggtgtcggatcatctctttctcaattgtgttacggcaacagcagtctggaccaagcttctgtcatggctcggtttcaattattatccaccac |
140 |
Q |
| |
|
|||||||| | ||| |||||| | || ||| ||||||| |||||||||||| | ||||| || |||||| |||||| ||||| | ||| ||||||||| |
|
|
| T |
33131705 |
gtcccggaagagtccgatcatttattcctccattgtgtgacggcaacagcaatttggactaatcttctgagatggcttggttttgactatcatccaccac |
33131606 |
T |
|
| Q |
141 |
cggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccat |
240 |
Q |
| |
|
|||| || || ||| |||| |||||||| |||| | | |||||||||||||| || |||||| |||||||| || ||||| | ||| ||||||| || |
|
|
| T |
33131605 |
cggatcttttctatcattggcagtggtggaatgactcggctaggaataagaaggttaggaagggttatcggattatttggcatgcggcggtttggactat |
33131506 |
T |
|
| Q |
241 |
ctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagt |
340 |
Q |
| |
|
||||| | |||||||||| ||||| ||||| || ||| | ||| |||| || ||||||||| |||||||||||||| ||| ||||||| |||||| |
|
|
| T |
33131505 |
ctggaaaattagaaatgattttatctttaataactctgtctgcggtgttgatgaagtggtggaggcaattaaggtgttagcttggcggtgggtattgagt |
33131406 |
T |
|
| Q |
341 |
cgtttgaagttgccggtttgtttgtattatgaatggacgtggaatcc |
387 |
Q |
| |
|
|| ||||| |||||||||||||| | | | |||||||| |||||||| |
|
|
| T |
33131405 |
cgcttgaatttgccggtttgtttatttaaagaatggacatggaatcc |
33131359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 157 - 414
Target Start/End: Complemental strand, 21867543 - 21867286
Alignment:
| Q |
157 |
ttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaat |
256 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| | || |||||||| || ||| ||||||||||| |
|
|
| T |
21867543 |
ttggaagtggtggaatgagttgtcggggaataagaagattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaat |
21867444 |
T |
|
| Q |
257 |
gactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccgg |
356 |
Q |
| |
|
||||| ||||| || || ||| ||| || ||| | || |||| |||| ||| ||||||||||| ||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
21867443 |
gacttgattttcaataactcttcttgtgcgattaaagaagtggtcgaggctatcaaggtgttagcttggaggtaggtgctgaaccgtttaaacttgccgg |
21867344 |
T |
|
| Q |
357 |
tttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
414 |
Q |
| |
|
||| ||| || |||||||| ||||| || |||| ||| || ||||||||||||| |
|
|
| T |
21867343 |
cgtgtatgttctacgaatggacttggaacccgcaagactgtctgctgcggtaatggtg |
21867286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 157 - 414
Target Start/End: Complemental strand, 21923404 - 21923147
Alignment:
| Q |
157 |
ttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaat |
256 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| | || |||||||| || ||| ||||||||||| |
|
|
| T |
21923404 |
ttggaagtggtggaatgagttgtcggggaataagaagattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaat |
21923305 |
T |
|
| Q |
257 |
gactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccgg |
356 |
Q |
| |
|
||||| ||||| || || ||| ||| || ||| | || |||| |||| ||| ||||||||||| ||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
21923304 |
gacttgattttcaataactcttcttgtgcgattaaagaagtggtcgaggctatcaaggtgttagcttggaggtaggtgctgaaccgtttaaacttgccgg |
21923205 |
T |
|
| Q |
357 |
tttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
414 |
Q |
| |
|
||| ||| || |||||||| ||||| || |||| ||| || ||||||||||||| |
|
|
| T |
21923204 |
cgtgtatgttctacgaatggacttggaacccgcaagactgtctgctgcggtaatggtg |
21923147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 15559086 - 15559158
Alignment:
| Q |
263 |
atttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttt |
335 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
15559086 |
atttttaataattctccttttggcattgacgagatggtggaggacattaagttgttagcgtggaggtgggttt |
15559158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 24836815 - 24837334
Alignment:
| Q |
1 |
accaccagattctgctctttcctgtgtgttgtgtcatggggtcccggaggtgtcggatcatctctttctcaattgtgttacggcaacagcagtctggacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24836815 |
accaccagattctgctctttcctgtgcgttgtgtcatggggtcccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggacc |
24836914 |
T |
|
| Q |
101 |
aagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcaga |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24836915 |
aagcttctgtcatggatcggtttcaattattatcgaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcaga |
24837014 |
T |
|
| Q |
201 |
aggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggt |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837015 |
aggggtatcggataatctggcacgcagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggt |
24837114 |
T |
|
| Q |
301 |
ggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttg |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837115 |
ggaggatattaaggtgttagcttggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttg |
24837214 |
T |
|
| Q |
401 |
gtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837215 |
gtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattg |
24837314 |
T |
|
| Q |
501 |
ctgtcctgcttctttgcacc |
520 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
24837315 |
ctgtcctgcttctttgcacc |
24837334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 434 - 502
Target Start/End: Original strand, 30871450 - 30871518
Alignment:
| Q |
434 |
tgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgct |
502 |
Q |
| |
|
|||||| ||||||| | ||||||||||| | |||||||||| | ||| |||||||||||||| ||||| |
|
|
| T |
30871450 |
tgggcggtgaggctgttgtatgctgctgttttgctgttttgacagggaatatatgacagcctcgttgct |
30871518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 520
Target Start/End: Original strand, 34326054 - 34326558
Alignment:
| Q |
15 |
ctctttcctgtgtgttgtgtcatggggtcccggaggtgtcggatcatctctttctcaattgtgttacggcaacagcagtctggaccaagcttctgtcatg |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| | ||| |||||||||| || ||||| ||| ||| |||||||||||| || |||||||||||||| || |
|
|
| T |
34326054 |
ctctttcctgtgtgttgtgtgatggggttccgaaagtgacggatcatcttttcctcaactgtattatggcaacagcagtttgaaccaagcttctgtcgtg |
34326153 |
T |
|
| Q |
115 |
gctcggtttcaattattatccaccaccggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggata |
214 |
Q |
| |
|
|||||||||||||| | |||| |||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
34326154 |
gctcggtttcaattttcatccgccaccggatttgtttcatctttggaagtggttggatgagttgtcaaggaataagaagatttggaagggttatcggatt |
34326253 |
T |
|
| Q |
215 |
atctggcacacagcgatttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaagg |
314 |
Q |
| |
|
|| |||||| | ||| ||||||| || |||||||||||||||||||| ||||| || |||||||||||| | ||||| || ||||||||||| ||||||| |
|
|
| T |
34326254 |
atttggcacgccgcggtttggactatttggagagttagaaatgacttcattttcaacaattctccttttcgcattgatgagatggtggaggacattaagg |
34326353 |
T |
|
| Q |
315 |
tgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
414 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||||||||||| |
|
|
| T |
34326354 |
tgttagcatggaggtgggttttgagccgcttgaa-ttgccggtttgtttgtactacaaatggacttggaatccacaagagtgtctggtgcggtaatggtg |
34326452 |
T |
|
| Q |
415 |
gatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctt |
514 |
Q |
| |
|
| |||| ||| || ||| |||| | || |||||||||||||||||| |||| | ||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34326453 |
gtttttggggtctgttacgtgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagcctcgctgctgtcctgcttctt |
34326552 |
T |
|
| Q |
515 |
tgcacc |
520 |
Q |
| |
|
|||||| |
|
|
| T |
34326553 |
tgcacc |
34326558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 311 - 520
Target Start/End: Original strand, 4028425 - 4028634
Alignment:
| Q |
311 |
aaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaat |
410 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| |||||||| |||| |||| |||||||||||| |
|
|
| T |
4028425 |
aaggtgttagcatggagatgggttttgagccgcttgaatttgccggtttgtttgtactacgaatggacttggaatccgcaagagtgtctggtgcggtaat |
4028524 |
T |
|
| Q |
411 |
ggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
510 |
Q |
| |
|
||||| |||| ||| || ||| ||| | || |||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
4028525 |
ggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacggcctcactgctgtcctgct |
4028624 |
T |
|
| Q |
511 |
tctttgcacc |
520 |
Q |
| |
|
|||||||||| |
|
|
| T |
4028625 |
tctttgcacc |
4028634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 465 - 510
Target Start/End: Complemental strand, 35052375 - 35052330
Alignment:
| Q |
465 |
tgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
510 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
35052375 |
tgctgttttggctacgagtatatgacagcctcattgttgtcctgct |
35052330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 661
Target Start/End: Complemental strand, 22793064 - 22793016
Alignment:
| Q |
611 |
tgctaaataacaaagatgcttcctatattagtgataacttgaattattaaa |
661 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
22793064 |
tgctaaataacaaagatgcttcctatgtt--tgaaaacttgaattattaaa |
22793016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University